Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g03066 ATGGCTAGAAAGAAGTCAAAGCTTGAATACATAGCAAACAACTCCAAGAGAAGGGCAACATTTAGGGCAAGGAAAACTAGTTTGATAAAAAAGATTGATGAGATTAGCACCCTCTGTGGGGTTCAATCTTGTGCTATAATCTACCCTCCAAATGAACCTCAGCCAGAGGTTTGGCCATCACCTCAGAAGGCCAAACAAGTGATCTCCAAGTTTAAGGAAATTCCCAAATTGGAACAAAACAAGAGAATGTTAACCCAAGAAAGTTTGTTAAGGAAAAGAATCCAAAAGGCCGAAGACCAGCTAAAGAAACAAAAGGATGAAAATAGGCAGAAAGAGATGAGCCATCTAATGTTTCAGTGTCTGAGCTCTGGTGAGGTCACTAGTAATGCTAGCTTGATTGATCTTTGTGATCTCTCACGTTTAATTGATCAAACTCTAAAGGAAATTGACCTGAAGATTGAAAGGATCCATGATCAAGAAAAGATGGCAAATCAAGTTGAAGCTACACAAACCCAACCTTGA 522 0.3927 MARKKSKLEYIANNSKRRATFRARKTSLIKKIDEISTLCGVQSCAIIYPPNEPQPEVWPSPQKAKQVISKFKEIPKLEQNKRMLTQESLLRKRIQKAEDQLKKQKDENRQKEMSHLMFQCLSSGEVTSNASLIDLCDLSRLIDQTLKEIDLKIERIHDQEKMANQVEATQTQP 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g03066 173 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst8g03066 173 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Arst8g03066 173 Coils Coil 80 114 - -
Arst8g03066 173 Gene3D - 13 120 IPR036879 GO:0003677|GO:0046983
Arst8g03066 173 FunFam Agamous-like MADS-box protein AGL80 13 98 - -
Arst8g03066 173 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Arst8g03066 173 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Arst8g03066 173 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Arst8g03066 173 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g03066 Arst-Chr8 41788347 41789002 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g03066 1 154 Type I MADS-box Gene Family AT5G48670 46.104 1.04e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Arst8g03066 SRF-TF 5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g03066 - - aip:107644294 200.675