Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g03052 ATGCATCCATCCCTAATATCTCGCAGGGGCTGGAAAGGGCTTTTGTTGTGGCCGCTGTTGTTTATCTACTTGATAAGCAAACGTAGAAACCAAGGCTGGGAATATAGGTTGAGGCTGTTGCAGATTGCTTTTAATAGCATGGCATCAAGTAATCCATTCTTTGACGATATAAGGACCAAAACTGAAGTTGATCCCCCTCAAAATGAGGAGGCAACAGATGTTAGTGAATTAGTAAATGATCCTGCCCTAACTGCTCTCAAACCTAATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGTCCTGTATGCTTGAATGCAATGTACCCTCCAATCCATCAGTGTTCAAATGGCCACACGATATGCTCAGGTTGCAAACCAAGGGTCCACAATCGGTGCCCTACTTGTAGGCATGAACTTGGCAACATCAGATGTTTAGCACTAGAGAAGGTGGCTGCATCTTTGGAACTTCCTTGTAAATATCAAGGTTTTGGGTGCATTGGTATCTATCCATATTATAGCAAGCTGAAACACGAATCCCAGTGTGCATATAGACCATATAACTGTCCATATGCTGGTTCAGAATGCTCAGCGATGGGTGATATACCCTACTTGGTGGCCCATTTGAAAGATGATCACAAAGTGGACATGCACAATGGTAGCACTTTTAACCATCGTTATGTAAAATCAAATCCACAAGAGGTTGAAAATGCCACATGGATGCTCACGGTTTTCAGCTGCTTTGGTCAGTATTTTTGTCTACACTTTGAAGCTTTTCAGCTAGGAATGGCTCCTGTCTACATAGCCTTTTTGCGATTTATGGGTGATGATAACGAGGCAAAGAATTATAGCTACAGTCTAGAAGTGGGTGGAAATGGGAGGAAAATGATTTGGCAGGGTGTTCCTAGAAGCATTAGGGACAGCCATCGCAAGGTTCGTGACAGTTTTGACGGTCTCATAATTCAGAGGAATATGGCTCTATTCTTCTCTGGCGGCGACAGGAAAGAATTAAAGCTAAGGGTTACCGGTAGGATCTGGAAAGAACAGTGA 1053 0.433 MHPSLISRRGWKGLLLWPLLFIYLISKRRNQGWEYRLRLLQIAFNSMASSNPFFDDIRTKTEVDPPQNEEATDVSELVNDPALTALKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCAYRPYNCPYAGSECSAMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g03052 350 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 211 343 IPR008974 GO:0005515
Arst8g03052 350 ProSiteProfiles Zinc finger RING-type profile. 102 138 IPR001841 -
Arst8g03052 350 ProSiteProfiles Zinc finger SIAH-type profile. 155 215 IPR013010 GO:0008270
Arst8g03052 350 CDD RING-HC_SIAHs 100 138 - -
Arst8g03052 350 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 80 349 - -
Arst8g03052 350 Pfam Seven in absentia protein family 144 343 IPR018121 GO:0005737|GO:0006511|GO:0007275
Arst8g03052 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 153 IPR013083 -
Arst8g03052 350 CDD Sina 216 344 - -
Arst8g03052 350 FunFam E3 ubiquitin-protein ligase SINAT5-like 60 153 - -
Arst8g03052 350 FunFam E3 ubiquitin-protein ligase SINAT5-like 211 343 - -
Arst8g03052 350 SUPERFAMILY TRAF domain-like 155 347 - -
Arst8g03052 350 SUPERFAMILY RING/U-box 94 142 - -
Arst8g03052 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 210 IPR013083 -
Arst8g03052 350 FunFam E3 ubiquitin-protein ligase SINAT3 154 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g03052 Arst-Chr8 41651173 41654583 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g03052 93 350 C3H Transcription Factor Family AT2G41980 79.070 4.53e-159 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g03052 K04506 - gmx:100793457 628.632