Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g02961 ATGTTAAAAAATGGAAAATCAAAATCACATGTACACACTTACAGCCCTACCAACTACAGAGTTCCAAATGCCATGTTCCTCTCCCACCGCCGCGATGCAGCGCTCCGCTTCACCTCCTCCGCCGCCACTACTGCTACCGACGCCGACATTGGGCCGCCAGGGGTTGTCTCCAGAGTTTCTTCCGTCACCGCCGGACCTAACTCTTCCTCCGCATCCCACTTGCTTCAAGCCTCTTCTTGGCCTGCTGCCATCGCTGCCGCTGCCGCTGCCGCAAATGGTGGCTCCCCCGCGCTCGAACTGAAACGCTCTTCTGAATCACTCTACTATCCAACCATTTTGGGTATCCCAAACACAGTTGGGCAAAGCGAAGCTTGGTATTCTACAAACTCACTAGCTAAGCGCCCTAGATATGAAAGTGGAAGCAATTTGCCTATATATCCCCAGAGACCAGGAGAGAAGGATTGTGCCCACTATATGCTTACAAGAACCTGTAAATTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGACGGTGGAATACCAGATTGGAAAGAGATTTCAAACACTGTTTCGAGTGAAACACTTCCCGAGAGAATAGGAGAACCAGACTGTCCATACTTTATTAAAACTCAGAGATGCAAGTTTGGTTCAAAGTGCAAGTTTAATCATCCAAGATCTTCTGAAAATGGTGATATTTCTGCCTTACCTGAGAGGCCATCAGAGCCCCTCTGTGCGTTCTATGTGAAGACTGGGAGATGTAAATTTGGTGCTACGTGTAAATTCCATCACCCGAAAGACATCCAGATTCTGACGTCTGATGAACTGAGTTATAATGCTGAACAAACACAAGAAAATTCCGTAAGGGAGGGAGCAACAGGAGATACACAATCTTTCTTATCTCCACTATTGCATAATAGCAAAGGACTTCCAGTAAGAATGGGGGAAGTTGATTGCCCATTCTACATGAAAACTGGAAGTTGCAAGTATGGTGCTACATGCCGCTACAACCATCCTGACAGGAATGCAATTTATCCGTCAGTTGCTGCATTTGGTTCTTCTATGGTGACGTCTATGGCTGCTAATCTAAGTATTGGATCTATAAATCCTTCTGTACCTATTTATCAAGCATATGACCCAAGGTTGTCAAATCCAATGTCTCAACTTGGAGTGGCAGAAATTATGTATCCTCAGCGTCCTGGACAGATTGAATGTGATTTCTATATGAAAACTGGTGAGTGCAAATTCGGGGAAAGATGCAAGTTCCATCACCCTCTTGACCGATCAGCAACATCAAGCATTAAGCTCACTCCCGCAGGATTACCTAGGAGAGAGGGTGTTAGCATCTGTCCGTATTACATGAAAACTGGCACTTGCAAGTTTGGTGCGACCTGTAAGTTTGACCACCCGCCACCCGGAGAAGTTATCGAGATAGCAAAATCGCAAGGAACATCCGCAACTGATGGAGGGGAAGCAGATTCATGA 1491 0.4614 MLKNGKSKSHVHTYSPTNYRVPNAMFLSHRRDAALRFTSSAATTATDADIGPPGVVSRVSSVTAGPNSSSASHLLQASSWPAAIAAAAAAANGGSPALELKRSSESLYYPTILGIPNTVGQSEAWYSTNSLAKRPRYESGSNLPIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPDGGIPDWKEISNTVSSETLPERIGEPDCPYFIKTQRCKFGSKCKFNHPRSSENGDISALPERPSEPLCAFYVKTGRCKFGATCKFHHPKDIQILTSDELSYNAEQTQENSVREGATGDTQSFLSPLLHNSKGLPVRMGEVDCPFYMKTGSCKYGATCRYNHPDRNAIYPSVAAFGSSMVTSMAANLSIGSINPSVPIYQAYDPRLSNPMSQLGVAEIMYPQRPGQIECDFYMKTGECKFGERCKFHHPLDRSATSSIKLTPAGLPRREGVSICPYYMKTGTCKFGATCKFDHPPPGEVIEIAKSQGTSATDGGEADS 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g02961 496 ProSiteProfiles Zinc finger C3H1-type profile. 149 177 IPR000571 GO:0046872
Arst8g02961 496 SUPERFAMILY CCCH zinc finger 244 269 IPR036855 GO:0046872
Arst8g02961 496 PANTHER PROTEIN PHOSPHATASE RELATED 304 358 - -
Arst8g02961 496 FunFam zinc finger CCCH domain-containing protein 37 399 487 - -
Arst8g02961 496 FunFam Zinc finger CCCH domain-containing protein 37 105 186 - -
Arst8g02961 496 SUPERFAMILY CCCH zinc finger 318 342 IPR036855 GO:0046872
Arst8g02961 496 SUPERFAMILY CCCH zinc finger 449 473 IPR036855 GO:0046872
Arst8g02961 496 Gene3D - 238 352 - -
Arst8g02961 496 Gene3D - 148 237 - -
Arst8g02961 496 Gene3D - 400 487 - -
Arst8g02961 496 SMART c3hfinal6 401 428 IPR000571 GO:0046872
Arst8g02961 496 SMART c3hfinal6 446 473 IPR000571 GO:0046872
Arst8g02961 496 SMART c3hfinal6 149 176 IPR000571 GO:0046872
Arst8g02961 496 SMART c3hfinal6 241 268 IPR000571 GO:0046872
Arst8g02961 496 SMART c3hfinal6 201 228 IPR000571 GO:0046872
Arst8g02961 496 SMART c3hfinal6 315 342 IPR000571 GO:0046872
Arst8g02961 496 ProSiteProfiles Zinc finger C3H1-type profile. 241 269 IPR000571 GO:0046872
Arst8g02961 496 ProSiteProfiles Zinc finger C3H1-type profile. 401 429 IPR000571 GO:0046872
Arst8g02961 496 ProSiteProfiles Zinc finger C3H1-type profile. 446 474 IPR000571 GO:0046872
Arst8g02961 496 SUPERFAMILY CCCH zinc finger 402 429 IPR036855 GO:0046872
Arst8g02961 496 ProSiteProfiles Zinc finger C3H1-type profile. 315 343 IPR000571 GO:0046872
Arst8g02961 496 SUPERFAMILY CCCH zinc finger 150 176 IPR036855 GO:0046872
Arst8g02961 496 ProSiteProfiles Zinc finger C3H1-type profile. 201 229 IPR000571 GO:0046872
Arst8g02961 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 404 427 IPR000571 GO:0046872
Arst8g02961 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 448 473 IPR000571 GO:0046872
Arst8g02961 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 317 341 IPR000571 GO:0046872
Arst8g02961 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 151 175 IPR000571 GO:0046872
Arst8g02961 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 244 268 IPR000571 GO:0046872
Arst8g02961 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 204 228 IPR000571 GO:0046872
Arst8g02961 496 SUPERFAMILY CCCH zinc finger 206 229 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g02961 Arst-Chr8 40459127 40470612 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g02961 444 485 C2H2 Transcription Factor Family AT3G02830 48.837 8.04e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Arst8g02961 zf-CCCH 2.3e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g02961 - - pvu:PHAVU_011G180700g 699.508