Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g02844 ATGGCTACCTCTATGCTCTCACCACCGAACCTTCTGTCCCTGGCAGCCCCATCACCAAGTTCCTCGTCCTCAACCTTATACTTTAAACCCGCCACCCATCTCTCGCAGCCATTTTCTCTGAAGTTGGTGCCTTCTAAACGCAATCGGAGACCCTTTGCGGTGGCCGCAGAGGAAGCCGCGGTCACTACATCGGTGGACCCTAAATCGGAGGCTGCAAGGAGGCTCTATGTTGGCAACATTCCTCGTACTGTCACCAACGATGAGCTCAAGAACATCGTTGAAGAGCATGGCGCTGTTGAGAAAGCTGAGGTTATGTATGATAAATACTCTGGACGGAGTCGTCGCTTTGCATTTGTTACGATGAAAACTGTTGAGGACGCAAATGCAGTTGTTGAGAAACTTAATGGCACTGAAATCGGAGGACGTGAGGTCAAGGTAAATATAACCGAAAAACCTTTATCAACAGTAGATACATCTTTCCTTCAGGCCGAGGAGTCCAACTTTGTTGACAGCCCCCACAAGGTATATGTGGGAAATCTGGCCAAGACAGTAACATCAGATACGCTTAAAACTTTTTTCTCTGAGAAGGGAAAAGTTCTTAGCGCCAAGGTCTCACGGGTTCCGGGGACCTCAAAATCGAGTGGCTATGGTTTTGTTAGTTTTTCTTCTGATGAAGATGTTGAAGCAGCAATCTTGTCTTTCAACAATGCCTCACTAGAAGGGCAAAAAATTCGTGTGAATAAGGCTTAG 750 0.4693 MATSMLSPPNLLSLAAPSPSSSSSTLYFKPATHLSQPFSLKLVPSKRNRRPFAVAAEEAAVTTSVDPKSEAARRLYVGNIPRTVTNDELKNIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAVVEKLNGTEIGGREVKVNITEKPLSTVDTSFLQAEESNFVDSPHKVYVGNLAKTVTSDTLKTFFSEKGKVLSAKVSRVPGTSKSSGYGFVSFSSDEDVEAAILSFNNASLEGQKIRVNKA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g02844 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 173 249 IPR000504 GO:0003723
Arst8g02844 249 PANTHER OS02G0815200 PROTEIN 32 248 - -
Arst8g02844 249 Gene3D - 157 249 IPR012677 -
Arst8g02844 249 SUPERFAMILY RNA-binding domain, RBD 67 151 IPR035979 GO:0003676
Arst8g02844 249 Gene3D - 43 156 IPR012677 -
Arst8g02844 249 SMART rrm1_1 74 147 IPR000504 GO:0003723
Arst8g02844 249 SMART rrm1_1 174 247 IPR000504 GO:0003723
Arst8g02844 249 SUPERFAMILY RNA-binding domain, RBD 169 249 IPR035979 GO:0003676
Arst8g02844 249 MobiDBLite consensus disorder prediction 1 25 - -
Arst8g02844 249 CDD RRM1_PSRP2_like 74 153 - -
Arst8g02844 249 FunFam 30S ribosomal protein 2, chloroplastic 160 249 - -
Arst8g02844 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 151 IPR000504 GO:0003723
Arst8g02844 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 145 IPR000504 GO:0003723
Arst8g02844 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 175 245 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g02844 Arst-Chr8 38828268 38830950 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g02844 75 249 Eukaryotic Initiation Factors Gene Family AT2G23350 32.022 3.28e-17 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g02844 K13126 - sind:105168752 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g02844 8 38828268 38830950 Arst8g02844 8 38828268 38830950 ECH