LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst8g02616	ATGGACCTGCTTCTCCTCACTCTTCATCTTCTTCTCTTACCCTTCACAACATCACAACAACAGAACCAAAACTACCCTTCTTCTGGGACACAAAGAAACGATACCTACTGTGACTACCCTTCAGTTTGTGGACCAAATGGGAACTGTGACATTAATCAATCACCAGCATGTTTCTGTTTGGATGGTTTCACACCTAAGTCACCGAGTGGTTACAGTTCAATGGATTATACACAGGGCTGTGTTAGAAACAAGGCTTTGAATTGTAGCACTGACGTGTTTGTTGCTTATTCTGTGTTCAAGGAACCAAGTGGCGGCTACTCTTTGTTGAACCAAAGATTGGGAGCGGAAGGTTGCAAGGGAAGCTGCAAGAGTAATTGTTCTTGCATGGCTTATTCTGTAACTGGGAGTGCATGCAAATTGTGGAGTGGTGATTTGTTTGATGTTAGGTTGGTTAAGGAAGGTGGTCAAGCTCTTTATATTCGAATGTCAGCTTCAGAGGAACACAAATCTGGAGGGGGAAATCACAAGAAGATAGTTGGAATAATAGTAGGAAGCACAGTTGCTACAGTTTCTGGAATGATAATGATATTGGCCTGTTGTTACATATTCAGAAAAAGAAGAAAGAAGTTAGAAGATATGAGATTGAGAGCTAGTGAGATTGTTGATCAAATCAATGAATATGAAGAAGGAGATATAGAGCTTCCATTTCTTGACCTATCAAGAATAGTTGAAGCCACTGGTAATTTTGCAATGGGAAACAAGTTAGGGGAAGGTGGTTTTGGACCTGTGTACAAGGGGACATTAGATGATGGTCGTCAAATCGCGGTAAAGAAGCTTTCGAGTAGTTCTGGGCAGGGGATAAATGAATTCAAGAATGAAGTACTACTCATAGCCAAACTTCAACACCGAAATCTTGTAAGGCTTCTCGGATGTTGCATCGAAGATGAAGAGAAACTGCTGATATATGAGTACATGCCTAATAAAAGCTTAGACGGCTTTATTTTTGATCAAACACGGAGAAAATTATTGGATTGGCCTAAGCGTTTCAACATCATTTGTGGGATTTCTAGAGGCCTACTTTATCTTCACGAGGATTCTAGGTTGAGGATTATACATAGAGATCTCAAAGCAAGTAACATTTTATTGGACAATGAGATGGATCCAAAGATCTCTGACTTTGGTTTGGCTCGATGTTTTGGAGGAGATCAAAGCAAAGGAAATACAAAGAAAATAGTAGGAACTTTTGGATATATGGCACCAGAATATGCTATTAGTGGACACTTCTCGGTAAAATCTGATGTGTTCAGTTTCGGAATTTTGTTGCTGGAGATAATCACAGGGAGAAAAAATAGAGGGATATATTTTCCAAGTGACAATGTGAATCTATATGGACATGCATGGGATCTATGGAAGCAAGGAAGGTCCTTAGAACTAGTTGATGAATGCCTTAAGGAGTCATGGAATTCGTCGGAAGCGCAGCGCTGCATCCACATTTGCCTGCTATGCGCGCAGCAGCATCCGCAAGATAGGCCGGACATGTCATCTGTGGTTCTGATGTTAGGAAGTGAAATCGATTTGCCTCAACCAAAGTTTCCTACTTTCATCATTGGTGGAAATTCTGATGGCAAAAGTTCTTCCTCTTGTCAAAATGAAATAAGCATTACAGAGGTGGAACCTCGATAA	1683	0.4064	MDLLLLTLHLLLLPFTTSQQQNQNYPSSGTQRNDTYCDYPSVCGPNGNCDINQSPACFCLDGFTPKSPSGYSSMDYTQGCVRNKALNCSTDVFVAYSVFKEPSGGYSLLNQRLGAEGCKGSCKSNCSCMAYSVTGSACKLWSGDLFDVRLVKEGGQALYIRMSASEEHKSGGGNHKKIVGIIVGSTVATVSGMIMILACCYIFRKRRKKLEDMRLRASEIVDQINEYEEGDIELPFLDLSRIVEATGNFAMGNKLGEGGFGPVYKGTLDDGRQIAVKKLSSSSGQGINEFKNEVLLIAKLQHRNLVRLLGCCIEDEEKLLIYEYMPNKSLDGFIFDQTRRKLLDWPKRFNIICGISRGLLYLHEDSRLRIIHRDLKASNILLDNEMDPKISDFGLARCFGGDQSKGNTKKIVGTFGYMAPEYAISGHFSVKSDVFSFGILLLEIITGRKNRGIYFPSDNVNLYGHAWDLWKQGRSLELVDECLKESWNSSEAQRCIHICLLCAQQHPQDRPDMSSVVLMLGSEIDLPQPKFPTFIIGGNSDGKSSSSCQNEISITEVEPR	560

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst8g02616	560	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	325	528	-	-
	Arst8g02616	560	Pfam	PAN-like domain	88	148	IPR003609	-
	Arst8g02616	560	ProSiteProfiles	PAN/Apple domain profile.	88	163	IPR003609	-
	Arst8g02616	560	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	213	324	-	-
	Arst8g02616	560	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	370	382	IPR008271	GO:0004672\|GO:0006468
	Arst8g02616	560	ProSiteProfiles	Protein kinase domain profile.	249	531	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst8g02616	560	MobiDBLite	consensus disorder prediction	538	560	-	-
	Arst8g02616	560	Pfam	S-locus glycoprotein domain	28	67	IPR000858	GO:0048544
	Arst8g02616	560	Gene3D	Phosphorylase Kinase; domain 1	210	324	-	-
	Arst8g02616	560	CDD	STKc_IRAK	255	520	-	-
	Arst8g02616	560	CDD	PAN_AP_plant	86	161	-	-
	Arst8g02616	560	SMART	ntp_6	88	162	IPR003609	-
	Arst8g02616	560	Coils	Coil	210	230	-	-
	Arst8g02616	560	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	36	543	-	-
	Arst8g02616	560	MobiDBLite	consensus disorder prediction	538	554	-	-
	Arst8g02616	560	Gene3D	Transferase(Phosphotransferase) domain 1	325	526	-	-
	Arst8g02616	560	SUPERFAMILY	Protein kinase-like (PK-like)	234	520	IPR011009	-
	Arst8g02616	560	SMART	serkin_6	249	520	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst8g02616	560	Pfam	Protein tyrosine and serine/threonine kinase	251	518	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst8g02616	Arst-Chr8	35871563	35874519	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst8g02616	205	560	Receptor kinase-like Gene Family	AT4G11530	51.762	2.52e-128	389

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Arst8g02616		PK_Tyr_Ser-Thr	7.3e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst8g02616	-		-	adu:107462470	783.097