Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g02592 ATGGCTTTGAGGGTGGCAGCGGCTACAGCTGCGGCGCAGCCTTCGTCGCGCGGTTTATGGCGGCNNNNCCGTTCTGCTTATCCGCCGTCGACTACTGCCGCAGTGTTTGCTCGACAGGCGGTGGAGCCCAAATCCTCCGTCTTCGTTTCCGGGCTTAACAAACGGACGACATCCGAACGCCTACTCCAAGAATTTTCTAAGTTTGGCGAAGTTGTTCGCACTAGGGTGATGATCGATAGAACAGGTTGTTCTAAAGGGTACGGCTTTGTACAATATGCCACTATAGAAGAGGCTGCAAAGGGCATCGAAAACATGAATGGAAAGTTTTTGGATGGTTGGGTTATATTTGTAGAGTATGCCAAATCTATCCCAGAATCTAGACAGCAATGTCCCCGGCATCTCCGGCAGTAG 411 0.5085 MALRVAAATAAAQPSSRGLWRXXRSAYPPSTTAAVFARQAVEPKSSVFVSGLNKRTTSERLLQEFSKFGEVVRTRVMIDRTGCSKGYGFVQYATIEEAAKGIENMNGKFLDGWVIFVEYAKSIPESRQQCPRHLRQ 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g02592 136 CDD RRM_SF 47 118 - -
Arst8g02592 136 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 112 IPR000504 GO:0003723
Arst8g02592 136 SMART rrm1_1 46 118 IPR000504 GO:0003723
Arst8g02592 136 SUPERFAMILY RNA-binding domain, RBD 38 131 IPR035979 GO:0003676
Arst8g02592 136 PANTHER NUCLEOLAR PROTEIN 8 33 129 - -
Arst8g02592 136 Gene3D - 30 135 IPR012677 -
Arst8g02592 136 SMART rrm2_1 46 118 IPR003954 GO:0003676
Arst8g02592 136 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 122 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g02592 Arst-Chr8 35484401 35486641 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g02592 29 127 Eukaryotic Initiation Factors Gene Family AT4G34110 33.000 3.72e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g02592 - - adu:107488830 176.407