Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g02394 ATGAGTGGTTACGATGTTGATGGCCATAGAAACCATGACAACTACTCATTCTTCAGTTTCCACAACCCATCATCATCGGATCGAAGCTACTCGAACAAAAAAATCTTGGTGATGGCCGTAGCTTCCTTAACAATGGTCATCATCGTGGTCTTGGCCCTTCACATCTACGCAAGGGTGGTTCTGAGACGCCAAGCTCGAAGAAGATTCGCCATTCACCAACTCAGCCTCACCGTACAAGCCCAAGCCCAAGCCCACGAACACAACACAGGCCTGGACCCTAACGTCATAGCCTCTCTCCCCACCTTCATCTACAAACGAAAAAAGAGAGAAGAAGAAGATGAAGATGGCGAGTGTGCTGTGTGTTTGAGTGGTGTAGAAGATGAACAAGAGGTGAGGTTGCTGCCGAATTGCAAGCACAGTTTCCATGTTGCTTGCATAGATACATGGCTGGCTTCTCATTCCACGTGTCCAATTTGTAGAACCAAGGCTGAACCAATCATAGGCCTTCAACTTCAACCTCACCCTCCTGAGCCTCCTATTCTTCTTCATGATGATGCTTCAACTTTTGAAGCTACTTCTGATAATAACAACAATTCTGCTATTGTGGGTAAGAACATTACTGGTTCTTCTGTTTCAAGATTCAGCAGCTCTTTTAGAAGGATTCTAAGTAGGGATAGATCTTCTAGCACAAGAATTCAACCTTCCATAGTTACCCATCTTGATGATCATGATTTAGAGAGCCAGCAATAA 750 0.4467 MSGYDVDGHRNHDNYSFFSFHNPSSSDRSYSNKKILVMAVASLTMVIIVVLALHIYARVVLRRQARRRFAIHQLSLTVQAQAQAHEHNTGLDPNVIASLPTFIYKRKKREEEDEDGECAVCLSGVEDEQEVRLLPNCKHSFHVACIDTWLASHSTCPICRTKAEPIIGLQLQPHPPEPPILLHDDASTFEATSDNNNNSAIVGKNITGSSVSRFSSSFRRILSRDRSSSTRIQPSIVTHLDDHDLESQQ 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g02394 249 FunFam E3 ubiquitin-protein ligase ATL6 79 165 - -
Arst8g02394 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 166 IPR013083 -
Arst8g02394 249 SMART ring_2 118 159 IPR001841 -
Arst8g02394 249 Pfam Ring finger domain 117 160 IPR001841 -
Arst8g02394 249 CDD RING-H2_EL5-like 117 160 - -
Arst8g02394 249 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 173 - -
Arst8g02394 249 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Arst8g02394 249 SUPERFAMILY RING/U-box 99 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g02394 Arst-Chr8 33090412 33091404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g02394 1 229 C3H Transcription Factor Family AT2G42360 43.033 8.71e-46 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g02394 K19038 - gmx:100780265 182.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g02394 8 33090412 33091404 Arst8g02394 8 33090412 33091404 ECH