Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g02364 ATGGCTTCGTTATTTAAGGATCCAGCGAAGCTTTCAGCTTATCGAGATAGAAGATTTCCCGGAAATCAGGAGGAGTTTGAGCATGCTCTGCAGACATCAACAACGGTTTATGTTGGAAATATGTCATTTTACACGACAGAGGAGCAAGTTTATGAGCTGTTTTCCCGAGCTGGAGAAATCAAGAAGATCATCATGGGCTTGGATAAGAACTCGAAAACACCATGCGGCTTCTGTTTTGTTCTATATTACTCACGTGAAGATACAGAGGATGCTTGCAAATATATAAGTGGGACAATACTTGATGATCGCCCCATTCGTGTTGATTTTGATTGGGGGTTCCAAGATGGAAGACAATGGGGCCGTGGTCGTAGCGGTGGCCAGGTTCGTGATGAATACCGAACTGATTATGATCCTGGTAGAGGTGGTTATGGGAAGTTGGTCCAGAAAGAGTTAGAAGTACAAAGGCAGCTTGTAGACTATGGCGCTGGTTCTTTGGGTTCTTTCCCACCTGTTATTCCGCATTCATATGGTAGACATGGCGGAGGCCATGGCCATGCTCATGGTCATGGTGGATCCCATCGGCATGGTAGAGACTACCATAGGAAGAGATACAGAGATGATGACCGCCACCCTCCACATGAATCCTCAAAGAGAACATCAGATCATGAATCTCGGAGAAATGCTGACCCTGATTCCAGACCGGAAAAAAATCCACGATTTCGCGAGAGTGGTGATTCTGACGAGGATGAGGAAGATGATCGAAAGAGACGGGCTTAA 777 0.4595 MASLFKDPAKLSAYRDRRFPGNQEEFEHALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRQLVDYGAGSLGSFPPVIPHSYGRHGGGHGHAHGHGGSHRHGRDYHRKRYRDDDRHPPHESSKRTSDHESRRNADPDSRPEKNPRFRESGDSDEDEEDDRKRRA 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g02364 258 MobiDBLite consensus disorder prediction 180 200 - -
Arst8g02364 258 SMART rrm1_1 35 108 IPR000504 GO:0003723
Arst8g02364 258 CDD RRM_NCBP2 36 113 IPR034148 -
Arst8g02364 258 Gene3D - 6 150 IPR012677 -
Arst8g02364 258 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 256 IPR027157 GO:0000339|GO:0005846|GO:0045292
Arst8g02364 258 MobiDBLite consensus disorder prediction 120 139 - -
Arst8g02364 258 MobiDBLite consensus disorder prediction 124 138 - -
Arst8g02364 258 SUPERFAMILY RNA-binding domain, RBD 22 144 IPR035979 GO:0003676
Arst8g02364 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Arst8g02364 258 MobiDBLite consensus disorder prediction 171 258 - -
Arst8g02364 258 FunFam Nuclear cap-binding protein subunit 2 4 150 - -
Arst8g02364 258 MobiDBLite consensus disorder prediction 201 258 - -
Arst8g02364 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g02364 Arst-Chr8 32862992 32866255 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g02364 31 109 Eukaryotic Initiation Factors Gene Family AT1G49760 27.848 7.30e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g02364 K12883 - gmx:100776217 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g02364 8 32862992 32866255 Arst8g02364 8 32862992 32866255 ECH