LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst8g02326	ATGCCTGCACAGAAGCGCCCTTACCCTGACACTCTCGACGACGCCGACGACTCCTCTAACCACCTCTTCCCGCATCGCCACCCCAAGCACCACCGCGACCGCACCCTCAAGCCCCACCATCCAGATGAAGATGCTGCTGGAGCCCACAAGGAAGAGGACGAGCAAGAACAAGAGCAAGGGGATGCTGAGCAAGAAGATGAGGAAGATGAGCAACAAGGAGCAGAAGAAGAAGATGATGATGATGAAGAAGAAGAAGAAGAGGACGATGACGAAGATGAAGATGAAGGTGAGGGAGATGAAGAAGATGAAGAAGAAGGGAAACACAACGACGAGGGTAAACCCGATGATTCTGACGACACCCCATCTTCGGATTCTGAAGAAAAACCAGAATTTGTGTTTGTAGAACTTCTGGAAATTCGTAAGGATGTCCAGTGCCCAATTTGCCTTGGCATTATTAAGAAAACAAGAACTGTCATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCAATGCGACTTGGGAACAATGAATGCCCTGCTTGCCGAACACATTGTGCCAGTCGCCGTTCTTTGAGAGATGATCCGAAATATGATGCTCTTATTGCTGCTTTATATCCAGATATTGAGAAGTACGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAGATTCAAGCTTCAATTGCAAAAGTTGTTCAACGGCAGTCTGAGGCACTAGTTAAGAGACGTAAAGATTCACCAAGTGTATTCGTGACAAGATCCCAGCGAAATCAACGAAATGCTTCTAGGAGACAAAATCAAGTGATTGATATTCAAGGATCTGAGGATAATGAGGAGGAAAATGACAATAACGAAAAGGACTCATCATCTGCTGATGAGCGGGGTACAGAGGCGAGGCAAAGAAGGAGAAAGAGATGGACCAGAGTTCGCACCTCTCAGCCCTCATCATCAATGGCAAGTCCTGATGGTGGATGTGCAGAAAGTGACTTGGATAACGGTAGAGAAAATCGAGGACTTTCAAGGCAGGTGTCAAAACCTCGAAAACTTACATGGGGAAGGGGTGGATTTAGAAGTCACACAAGGCATGGAAGTGGCGGTGGTAGTAGTAGCAAAACCTCTCGCAGTAGTCGAGTGTCTAAGATGGTTGATTTTCTCCGAAACTTGGATGAGAATGCTGATGAGCAGTTAGATATCCATCTCATGCTTTATTCTCTGGGCAAACGAGGCGCACCAAGTTTGGAGAAGCCACACCTTTGCTGTCGCCCAACTTTGTCTGTCAAGAACCTTTGCGAATATGTTGCTCGCCAAACACCTGTGCCTGTTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCAGTGGCACAGATTTCGACAAGTCAACTGATGAGACTTCATCCTTGAAATGTGATGAGCTAACAACTCTGGTTATAGATCCATCTAAATATGAACTAGAAATTTTGCAGGGAGATGAATCTTTAGCAGGGATTAGATCTAAATGCATATCTAAAAGGGAGCATTTGATTCTGGCATACAGGCGGAAAGGGGCACTATAG	1578	0.4582	MPAQKRPYPDTLDDADDSSNHLFPHRHPKHHRDRTLKPHHPDEDAAGAHKEEDEQEQEQGDAEQEDEEDEQQGAEEEDDDDEEEEEEDDDEDEDEGEGDEEDEEEGKHNDEGKPDDSDDTPSSDSEEKPEFVFVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPKYDALIAALYPDIEKYEEEELEFREEEKNRNKQIQASIAKVVQRQSEALVKRRKDSPSVFVTRSQRNQRNASRRQNQVIDIQGSEDNEEENDNNEKDSSSADERGTEARQRRRKRWTRVRTSQPSSSMASPDGGCAESDLDNGRENRGLSRQVSKPRKLTWGRGGFRSHTRHGSGGGSSSKTSRSSRVSKMVDFLRNLDENADEQLDIHLMLYSLGKRGAPSLEKPHLCCRPTLSVKNLCEYVARQTPVPVEEVEILAVKGCSGTDFDKSTDETSSLKCDELTTLVIDPSKYELEILQGDESLAGIRSKCISKREHLILAYRRKGAL	525

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst8g02326	525	MobiDBLite	consensus disorder prediction	56	106	-	-
	Arst8g02326	525	MobiDBLite	consensus disorder prediction	9	23	-	-
	Arst8g02326	525	SUPERFAMILY	RING/U-box	132	199	-	-
	Arst8g02326	525	CDD	RING-HC_RING1-like	142	207	-	-
	Arst8g02326	525	ProSiteProfiles	Zinc finger RING-type profile.	145	185	IPR001841	-
	Arst8g02326	525	PANTHER	OS11G0578200 PROTEIN	66	522	IPR044592	-
	Arst8g02326	525	SMART	ring_2	145	184	IPR001841	-
	Arst8g02326	525	Pfam	Zinc finger, C3HC4 type (RING finger)	144	184	-	-
	Arst8g02326	525	MobiDBLite	consensus disorder prediction	1	128	-	-
	Arst8g02326	525	MobiDBLite	consensus disorder prediction	336	350	-	-
	Arst8g02326	525	MobiDBLite	consensus disorder prediction	370	385	-	-
	Arst8g02326	525	MobiDBLite	consensus disorder prediction	258	280	-	-
	Arst8g02326	525	MobiDBLite	consensus disorder prediction	107	128	-	-
	Arst8g02326	525	ProSitePatterns	Zinc finger RING-type signature.	161	170	IPR017907	-
	Arst8g02326	525	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	96	215	IPR013083	-
	Arst8g02326	525	MobiDBLite	consensus disorder prediction	243	385	-	-
	Arst8g02326	525	MobiDBLite	consensus disorder prediction	36	55	-	-
	Arst8g02326	525	Coils	Coil	48	84	-	-
	Arst8g02326	525	Coils	Coil	211	242	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst8g02326	Arst-Chr8	32674176	32679472	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst8g02326	138	208	C3H Transcription Factor Family	AT3G23060	35.135	4.22e-07	50.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst8g02326	K10695		-	gmx:100776547	563.148