LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst8g02306	ATGTCTCTATTTCATTTCCTTGTTATCCTTCTTCATATTGTAACCACTCTGAACTTAGCTTCAGCCACTGAATTTGTCTACAACACAAATTTCAGCCACAAAAACATCAATTTATTTGGAAATGCAAGTATTGAATCCTCCATTCTAACTCTAACTAATCAGAGTTTCTTCTCCATAGGCCGCGCTTTCTATCCTCATAAAATACCTACCAAACAAGCCAACTCTTCAACTCTTCTCCCATTTGCAACCTCCTTCATCTTCTCTGTTTCCCCCATTAAAAACTTTGTTATTACTGGTCATGGTCTTGCTTTCATATTTGCACCATCAAGAGGTGTAAACGGCAGATCCTCGGCCGAGTATCTTGGCCTTTTCAATCTCAGCAATGAAGGCAGTCCCCAGAACCATGTTTTTGGAGTTGAATTCGACACAATTATGAATGAAGAGTTCGACGATATCAATGGAAATCATGTTGGCGTTGACATAAACTCGCTTGCTTCGACAATTTCACATGAGGCTGGATATTGGTGTGGGAATGATGATAAGGAGTTCAAGGTGTTGAAGATAAGCAATGGAGAGAATTATCAGGTATGGATTGAGTTCAAGCATTCACAGCTTAATGTTACTATGGCTAAGGCAGGACAAAAGAGGCCTCGAGCGCCTCTTATCAGTATAAACCTTAATGTTTCTGAGGTTCTTATGGATGAAATGTATGCTGGTTTCAGTGCATCAACAGGAAAAATATTAGACAGGGTTAATATTCTTGCTTGGAGTTTTAGCAATTCAAATTTTTCAATTGGTGATGCTTTAGTGACTGACAACTTGCCTTCATTCTTCCTTCATAAAAGATGGTTTTCCGGATTAAGAGCCTTACTTCTTGGAGTAATCAGTGTGCTAATCATTGGTTGTGGCTCTACAGTGTTGTTTGTGCTACGCAGGCGAAACAAGAAAGGTGAAGAACTTGAAGACTGGGAGTTAGAGTATTGGCCTCATAGGATTAGTTTCCATGAGATTGATGCAGCGACTAGGGGTTTCTCTGAAGAGAACGTGGTTGGTAATGGCGGAAATGGGAAGGTATATAAAGGAGTTCTGCAAGGTGAAGAAGTAGCAGTGAAGAGAATTCTTCAAGAAAGAGAACAAGGGATGAGAGAGTTCTTGGCTGAGGTCTCAAGTCTTGGTAGAATGAGGCACAAAAACTTGGTTGGATTGAGAGGTTGGTGCAAGAAAGAAAAGGGAAACTTGATTCTTGTTTATGACTTGATGAACAATGGAAGTTTAGACAAAAGGATCTATGACAGTGACGAAAACATGATGCTATGTTGGGAAGAGAGGATAAATATTTTGAAAAATGTGGCTGCAGGGATTCTATACCTGCATGAGGGTTGGGAAGTTAAGGTTTTGCATAGGGACATCAAAGCAAGCAATGTTCTACTGGACAAGGAGATGAATGCAAGGTTGGGAGATTTCGGATTGGCGCGAATGCATGATCATCATGGACAAGTAGCCACCACAACACAAGTATTAGGCACAGTAGGATACATAGCTCCTGAAGTAATTAGAACTGGAAGAGCATCAACACAATCTGATGTGTATGGTTTCGGAATAATGATGTTGGAAGTGCTTTGTGGAAGAAGGCCAACTGAAGAACACAAGCCAGGGCTACTTGAATGGTTGGTCTCCCAAACGGTGAATGGCCAGTTGCTTAGTGCTGTTGATCAGAGATTGAAGGCTAAGGGTGGATACACCATTGAAGAAGCTGAGAGGTTGCTTCATTTGGGTCTGTTATGTTCAAATTCAGACCCTAATAAGAGGCCAATGATGAGGCAGATTTTGAAAATGCTAGAAGGTGATATGGAAGGAGTTGATTCTGATGAAGAAAATATGGAGATCAGTTTACTAGGAAAAATAAAATCAGCATCAATGTGGTCTGATAATGAATGTACTTTTCCACAACCTACTTTGGATGAAATTAGGATATTCAGTTCTAGTTCTATGATGATTCCTAGAAGTGGCTCAGGTACCATTCCTCCAGAATTCTCAGAATCAGACATCATTAGAGAAGGTAGGTAA	2067	0.403	MSLFHFLVILLHIVTTLNLASATEFVYNTNFSHKNINLFGNASIESSILTLTNQSFFSIGRAFYPHKIPTKQANSSTLLPFATSFIFSVSPIKNFVITGHGLAFIFAPSRGVNGRSSAEYLGLFNLSNEGSPQNHVFGVEFDTIMNEEFDDINGNHVGVDINSLASTISHEAGYWCGNDDKEFKVLKISNGENYQVWIEFKHSQLNVTMAKAGQKRPRAPLISINLNVSEVLMDEMYAGFSASTGKILDRVNILAWSFSNSNFSIGDALVTDNLPSFFLHKRWFSGLRALLLGVISVLIIGCGSTVLFVLRRRNKKGEELEDWELEYWPHRISFHEIDAATRGFSEENVVGNGGNGKVYKGVLQGEEVAVKRILQEREQGMREFLAEVSSLGRMRHKNLVGLRGWCKKEKGNLILVYDLMNNGSLDKRIYDSDENMMLCWEERINILKNVAAGILYLHEGWEVKVLHRDIKASNVLLDKEMNARLGDFGLARMHDHHGQVATTTQVLGTVGYIAPEVIRTGRASTQSDVYGFGIMMLEVLCGRRPTEEHKPGLLEWLVSQTVNGQLLSAVDQRLKAKGGYTIEEAERLLHLGLLCSNSDPNKRPMMRQILKMLEGDMEGVDSDEENMEISLLGKIKSASMWSDNECTFPQPTLDEIRIFSSSSMMIPRSGSGTIPPEFSESDIIREGR	688

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst8g02306	688	Gene3D	-	21	266	-	-
	Arst8g02306	688	SMART	serkin_6	344	613	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst8g02306	688	FunFam	Putative L-type lectin-domain containing receptor kinase VII.2	306	419	-	-
	Arst8g02306	688	Pfam	Protein kinase domain	345	611	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst8g02306	688	PANTHER	-	37	617	-	-
	Arst8g02306	688	Gene3D	Phosphorylase Kinase; domain 1	305	419	-	-
	Arst8g02306	688	FunFam	L-type lectin-domain containing receptor kinase S.4	21	266	-	-
	Arst8g02306	688	ProSitePatterns	Protein kinases ATP-binding region signature.	350	371	IPR017441	GO:0005524
	Arst8g02306	688	SUPERFAMILY	Concanavalin A-like lectins/glucanases	23	261	IPR013320	-
	Arst8g02306	688	MobiDBLite	consensus disorder prediction	667	688	-	-
	Arst8g02306	688	FunFam	L-type lectin-domain containing receptor kinase S.4	420	626	-	-
	Arst8g02306	688	ProSiteProfiles	Protein kinase domain profile.	344	620	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst8g02306	688	SUPERFAMILY	Protein kinase-like (PK-like)	320	614	IPR011009	-
	Arst8g02306	688	Gene3D	Transferase(Phosphotransferase) domain 1	420	634	-	-
	Arst8g02306	688	Pfam	Legume lectin domain	23	262	IPR001220	GO:0030246
	Arst8g02306	688	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	465	477	IPR008271	GO:0004672\|GO:0006468
	Arst8g02306	688	CDD	STKc_IRAK	350	615	-	-
	Arst8g02306	688	CDD	lectin_legume_LecRK_Arcelin_ConA	23	261	IPR001220	GO:0030246

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst8g02306	Arst-Chr8	32258266	32260499	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst8g02306	18	557	Receptor kinase-like Gene Family	AT4G04960	57.091	0.0	613

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Arst8g02306		Pkinase	1e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst8g02306	-		-	gmx:100804553	1004.2