LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst8g02304	ATGGGTTGCATAACTTCCAAGAGTTCTGCAGCTGTTGATGACAGTAGGGAAGGTATGAAAAGGAAATTGGCATCATCATCATCATCAAGCAAAAGGGTATCATCAAATATCAGTGTTCCAAGGCTGAATTCTTCTAGAAGAGTTGAGGATAACAAGGTTTTGGATGGTGTTGAGTTAAAGAATAAAATAGAGAAGCATGAATTGAGTGGTGTGGTTGATCATCATCATCATAATTATCATCATGGAATTGGAAGAGTTCCAAAGGCTTCACAGGGAGAGCAAGTTGCAGCAGGGTGGCCCACATGGCTTTCTTCTGTTGCTGGTGAAGCTATCAGAGGGTGGATACCTAGGAGTGCTAATACTTTTGAGAAGTTCTATAAAATTGGCCAAGGAACTTATAGTACTGTATATAAAGCACGTGACATAACTCAACAAAAGATTGTTGCCCTGAAGAGAGTACGTTTTGATAATCTCGATCCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCTCATTCTGCGCAGGCTTGACCATCCAAATGTAATAAAGTTGGAGGGTTTGATAACAGCGCCAACATCTCGCAGCTTGTACCTTGTTTTTGAATATATGGAACATGATCTTACTGGACTTGCAGCAAATCCTGCCATTAAGTTTTCTGAACCACAGGTTAAATGCTACATGAAGCAGCTCCTTAGTGGATTAGATCATTGTCATGGTCATGGTGTCCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGACAATAACGGCATCTTAAAGATTGCAGATTTTGGCTTGGCAAATTTTTTAGATCCCCATCATAATGTTCCATTGACCAGCCGTGTTGTAACTCTATGGTATAGACCCCCAGAACTTTTGCTTGGAGCATCTCATTATGGAGTTGCAGTGGATTTGTGGAGCACTGGTTGCATACTTGGAGAATTATATTCTGGCAGGCCCATATTGCCTGGAAAAACAGAGGTTGAGCAATTGCATAAGATTTTTAAACTTTGCGGATCACCATCCGAGGACTACTGGTGTAAATTGCGGTTGCCACATTCAACGGTATTCAGGCCTCCGCACCATTATAGGCGATGTATTACAGACACATTTAAGGAATGCCCATCTGCTGCCGTGAGGCTTATAGAGACCCTACTTTCTGTTGATCCTACAAATCGAGGAACAGCAGCCGATGCTCTAAAGAGTGATTTCTTTAAATTGGAACCCCTTGCTTGTGATCCATCAAGTTTACCAAAATATCCTCCTAGCAAAGAGATTGACTCTAAAATCTTGGATGAGGCAACAAGAAGGCAAGGAGCTGCTGGGGGAAAGCAGCAAAAATCTGGATGGAGAGTCAGACAGGATAACGAACAACATTCTTTTGTCCAATCAAAAGGCAATGTTAACTCCCGCAAGTCGGTGCAGCAAGGGCAACATTGTTCAAGCTCAAAGAGCCAGAGTGGATTGTTAAACTCTCACGGCGAAGCAGTGTCTGGATATTTAGTGTTTCCACATAACCAGTCAAATGACACTAAAGAAATGGAAAATGACTTCTCTGGACCTCTTTATCGGAGGCCTTCACATTCAGGTCCATTAGTTCCGGTCTTTGCCTGGGAAAAGGCTAGAAACGAAGTTGGTGACCAGATTTCTGGATCAAACAAAGCCAATCTTTCAAAAGTGTCTGGTTTAGTGGCATCTAGGACTGTGTTGTCTCAGGATCAAGAACAAAAGCCAGTTCCCTTGAAGTCGAAGAAAACAAGTCAACTACAACAATCTTTTGTTTCGACTAATGGTGGTTCAGGAACAAGGAGGAGGCATGATAGGTCTCGCTTGTCTCAGAGAATCGATATCAGTCAACTTCAAGAAGGAAAAATCCCCACTGAAAATTTAATTCAGGATGGACGTGAGTCCATGGGAAACAAAATGTATCTCTCTGGTCCATTGGTGGTTTCATCAAACAATGTAGATCAGATCCTCAAAGAACATGATAGAAAGATCCAAGAATATTCAAGGCGATTAAGAAATGATAGGTCCAAAGGTGACAAGATTCATGCAAAGTGA	2064	0.4191	MGCITSKSSAAVDDSREGMKRKLASSSSSSKRVSSNISVPRLNSSRRVEDNKVLDGVELKNKIEKHELSGVVDHHHHNYHHGIGRVPKASQGEQVAAGWPTWLSSVAGEAIRGWIPRSANTFEKFYKIGQGTYSTVYKARDITQQKIVALKRVRFDNLDPESVKFMAREILILRRLDHPNVIKLEGLITAPTSRSLYLVFEYMEHDLTGLAANPAIKFSEPQVKCYMKQLLSGLDHCHGHGVLHRDIKGSNLLIDNNGILKIADFGLANFLDPHHNVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSTGCILGELYSGRPILPGKTEVEQLHKIFKLCGSPSEDYWCKLRLPHSTVFRPPHHYRRCITDTFKECPSAAVRLIETLLSVDPTNRGTAADALKSDFFKLEPLACDPSSLPKYPPSKEIDSKILDEATRRQGAAGGKQQKSGWRVRQDNEQHSFVQSKGNVNSRKSVQQGQHCSSSKSQSGLLNSHGEAVSGYLVFPHNQSNDTKEMENDFSGPLYRRPSHSGPLVPVFAWEKARNEVGDQISGSNKANLSKVSGLVASRTVLSQDQEQKPVPLKSKKTSQLQQSFVSTNGGSGTRRRHDRSRLSQRIDISQLQEGKIPTENLIQDGRESMGNKMYLSGPLVVSSNNVDQILKEHDRKIQEYSRRLRNDRSKGDKIHAK	687

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst8g02304	687	Coils	Coil	660	680	-	-
	Arst8g02304	687	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	242	254	IPR008271	GO:0004672\|GO:0006468
	Arst8g02304	687	ProSiteProfiles	Protein kinase domain profile.	122	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst8g02304	687	ProSitePatterns	Protein kinases ATP-binding region signature.	128	151	IPR017441	GO:0005524
	Arst8g02304	687	FunFam	probable serine/threonine-protein kinase At1g54610	205	446	-	-
	Arst8g02304	687	PANTHER	CELL DIVISION PROTEIN KINASE	120	411	-	-
	Arst8g02304	687	MobiDBLite	consensus disorder prediction	572	611	-	-
	Arst8g02304	687	MobiDBLite	consensus disorder prediction	572	601	-	-
	Arst8g02304	687	CDD	STKc_CDK9_like	122	406	-	-
	Arst8g02304	687	SMART	serkin_6	122	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst8g02304	687	MobiDBLite	consensus disorder prediction	463	492	-	-
	Arst8g02304	687	MobiDBLite	consensus disorder prediction	1	44	-	-
	Arst8g02304	687	Gene3D	Transferase(Phosphotransferase) domain 1	205	444	-	-
	Arst8g02304	687	Gene3D	Phosphorylase Kinase; domain 1	109	204	-	-
	Arst8g02304	687	Pfam	Protein kinase domain	122	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst8g02304	687	MobiDBLite	consensus disorder prediction	22	44	-	-
	Arst8g02304	687	FunFam	probable serine/threonine-protein kinase At1g54610	109	204	-	-
	Arst8g02304	687	SUPERFAMILY	Protein kinase-like (PK-like)	115	407	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst8g02304	Arst-Chr8	32244797	32250023	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst8g02304	114	448	Core Cell Cycle Gene Families	AT5G10270	49.573	1.30e-109	339

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Arst8g02304		Pkinase	2.1e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst8g02304	-		K08819	gmx:100775462	904.434