Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Arst8g02288 | ATGGATTTACATCAGTATTTTGAAGGGGGTATGCCCCAAATGGATTACTTTGAAGATAATTCATCTCTGGAAATGTGGAAATGTGCTAGTGATAGTGATGCCATTGCAGATTCAGATGGAAATGCCTCTGGTGGTGGCTTTGAATGCAACATCTGCCTCGAATGCGTGCAAGATCCGGTAGTCACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAGTGGCTTAATTTCCGAAACATCTCTTCCGAAATCGGAGAGAAGAGGAAGCCACAATGTCCAGTATGCAAGTCAGAAATTTCTCAATCCTCCCTTGTTCCCCTATACGGCCGTGGCCAGGCTAGCTCAGCCTCAGAAGACAAAGCTCACCAAGCCGGAGTTGTCATACCGCGGCGACCCCTTGGTCCAGGATCATCAAGTACTGCAAACGTTTCTCAACCTACATCTCGAGTTTATCATTCCCATTATCCTGATCCTTCTCAACAATTCAACTCCATTCCAGGTAGTTACTCTTCGCCGCTAACGAACTCCTTTAACACCACATATGGAATCATTGGCGAAACAATATATGCAAGGGTATTTGGAAACCAGGTGACCAACATATACACATACCCCAATTCATACCATCTTGCTGGGAACAATAATCCAAGGATCAGAAGGTATCTAATGGAAGCTGATAGATCACTGAGCAGAATATGTTTCTTCCTCTTTTGTTGCACGGTTTTGTGTCTTCTCTTATTCTGA | 747 | 0.4431 | MDLHQYFEGGMPQMDYFEDNSSLEMWKCASDSDAIADSDGNASGGGFECNICLECVQDPVVTLCGHLYCWPCIYKWLNFRNISSEIGEKRKPQCPVCKSEISQSSLVPLYGRGQASSASEDKAHQAGVVIPRRPLGPGSSSTANVSQPTSRVYHSHYPDPSQQFNSIPGSYSSPLTNSFNTTYGIIGETIYARVFGNQVTNIYTYPNSYHLAGNNNPRIRRYLMEADRSLSRICFFLFCCTVLCLLLF | 248 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Arst8g02288 | 248 | Pfam | Zinc finger, C3HC4 type (RING finger) | 49 | 97 | IPR018957 | GO:0046872 | |
Arst8g02288 | 248 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 18 | 245 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Arst8g02288 | 248 | ProSitePatterns | Zinc finger RING-type signature. | 64 | 73 | IPR017907 | - | |
Arst8g02288 | 248 | SMART | ring_2 | 49 | 97 | IPR001841 | - | |
Arst8g02288 | 248 | ProSiteProfiles | Zinc finger RING-type profile. | 49 | 98 | IPR001841 | - | |
Arst8g02288 | 248 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 29 | 126 | IPR013083 | - | |
Arst8g02288 | 248 | SUPERFAMILY | RING/U-box | 46 | 110 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Arst8g02288 | Arst-Chr8 | 32002920 | 32005543 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Arst8g02288 | 43 | 248 | C3H Transcription Factor Family | AT4G28270 | 40.187 | 5.17e-46 | 150 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Arst8g02288 | K10666 | - | gmx:100785491 | 330.102 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Arst8g02288 | 8 | 32002920 | 32005543 | Arst8g02288 | 8 | 32002920 | 32005543 | ECH | |
Arst3g01819 | 3 | 21273962 | 21276526 | Arst8g02288 | 8 | 32002920 | 32005543 | PCT |