Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g02173 ATGGACATAGATTCTTCAGGAGGCACATCCAATTGGCTCTACGATTATGGCTTTGATAACATCTCTGTGGCTGACTTCATGGCTCCAGACTCTGCTGCTTTCACCTGGCTGCCTCAACCTCAGCCTCACACCAATTTCAAGCCTCCTTCTTCCAATATCAGCTTGGAAATGGAATACTCAGTGGATTCAATTGTGCTGGAAGGTGGCCCTTCAAAACGGTTGAGGACTGAATCATGTGCATCTGGAACCAAGGCATGTCGAGAGAAATTGCGAAGGGACAAACTGAATGAGAGGTTTCTGGAACTGAGTTCCATCTTGGAGCCTGGTAGCATGCAGCCCAAAACCGACAAGGTTGCCATATTAAGTGATGCCGTCCGAGTCGTAAACCAATTAAGAGATGAAGCAGAGAAGCTGAAGGAAATGAATGATGAAATGCTTGAAAAAATTAAAGAGCTCAAGGCTGAGAAGAATGAGCTTCGGGATGAGAAAAATAGGCTCAAGGTAGAGAAAGAGAAGTTGGAGCAGCAGTTCAAGATGACAAATGTTCAGCCAAGCTTCCTCCATCATGCTCCGGCGGCCACGAAAGCGCACGGTGCTAGCCAAAAGCTGATACCCTTCATAGGTTACCCTGGCATAGCCATGTGGCAGTTTATGCCCCCAGCTGCAGTTGATACATCAAAGGATCATCTCCTTCGTCCACCAGTGGCATAA 711 0.4712 MDIDSSGGTSNWLYDYGFDNISVADFMAPDSAAFTWLPQPQPHTNFKPPSSNISLEMEYSVDSIVLEGGPSKRLRTESCASGTKACREKLRRDKLNERFLELSSILEPGSMQPKTDKVAILSDAVRVVNQLRDEAEKLKEMNDEMLEKIKELKAEKNELRDEKNRLKVEKEKLEQQFKMTNVQPSFLHHAPAATKAHGASQKLIPFIGYPGIAMWQFMPPAAVDTSKDHLLRPPVA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g02173 236 PANTHER BHLH TRANSCRIPTION FACTOR 5 236 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Arst8g02173 236 Coils Coil 121 183 - -
Arst8g02173 236 Gene3D - 82 160 IPR036638 GO:0046983
Arst8g02173 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 79 131 IPR011598 GO:0046983
Arst8g02173 236 CDD bHLH_AtILR3_like 84 160 - -
Arst8g02173 236 SMART finulus 85 137 IPR011598 GO:0046983
Arst8g02173 236 FunFam Transcription factor bHLH104 82 164 - -
Arst8g02173 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 145 IPR036638 GO:0046983
Arst8g02173 236 Pfam Helix-loop-helix DNA-binding domain 83 131 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g02173 Arst-Chr8 30490128 30492311 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g02173 64 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51070 61.236 8.93e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst8g02173 HLH 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g02173 - - aip:107613798 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g02173 8 30490128 30492311 Arst8g02173 8 30490128 30492311 ECH