Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g02158 ATGAGGGTAGTTATTGTTACAAGAATAAACCAATTCTTCATTGAAGTAGGTGCCCAAGAAACAGTTTCCGAGATCAAAAGAAAAATAGAACAAATTCATGGTACTCCAGCAGCTTCACAAATCCTAACAGTTTCTGGATGGGAACTAGTGGATGGCTTAGACATGGAAGACTATCCTATAGTCACTGAAGGTACAAAAATTGACCTCAATATCAAACCAAGCACAGAACCACATTTTAACCAGGTTAACAAAATGCAAATCACAGTGAAATTTTCAGCTAGAAGGATCAAGATAGAGGTGGACAGAACAGATACTGTTCGGAGCTTAAAGGAAAAAATCCACATAATTGACAGCACCCCCATCAAAAGAATGACACTAGTTTTTTCAGGGGTGGAGTTGAACGAAGATTTCAGAAAGCTAAGTGAGTATGGCATACGTGAGTCTTCTGAAATTGTTGTGTTCCTCAACACCATAACTAGGGCAAGAGATGAAGCTCCCTCAAGGAAGGTGAGCCTGGTGGTAAAAACTTCCTCTAGTTTGCTTAATGCAGCAACTATTCCCCTGGAGATGAGAGATGCATGCACTGTAAATGACTTAAAGCAGTTGTTGTTAAGCAGAAAAATTCTGCCTGTTGATGACTACTTATTTATTCATAGGCAAAGGATCATGAGGGATAGCTGCAGCCTCAGATGGCACGGTGTTGAAAATGGAGACTGCCTCTATGTGTTCAAAGGGACAGTTAGTCGCAGTGGATATCACTAA 762 0.4042 MRVVIVTRINQFFIEVGAQETVSEIKRKIEQIHGTPAASQILTVSGWELVDGLDMEDYPIVTEGTKIDLNIKPSTEPHFNQVNKMQITVKFSARRIKIEVDRTDTVRSLKEKIHIIDSTPIKRMTLVFSGVELNEDFRKLSEYGIRESSEIVVFLNTITRARDEAPSRKVSLVVKTSSSLLNAATIPLEMRDACTVNDLKQLLLSRKILPVDDYLFIHRQRIMRDSCSLRWHGVENGDCLYVFKGTVSRSGYH 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g02158 253 Pfam Ubiquitin family 10 73 IPR000626 GO:0005515
Arst8g02158 253 Pfam Ubiquitin family 87 156 IPR000626 GO:0005515
Arst8g02158 253 CDD Ubl_ubiquitin_like 185 243 - -
Arst8g02158 253 ProSiteProfiles Ubiquitin domain profile. 170 242 IPR000626 GO:0005515
Arst8g02158 253 Gene3D - 157 249 - -
Arst8g02158 253 CDD Ubl_ubiquitin_like 3 69 - -
Arst8g02158 253 SUPERFAMILY Ubiquitin-like 78 157 IPR029071 -
Arst8g02158 253 PANTHER UV EXCISION REPAIR PROTEIN RAD23 85 156 - -
Arst8g02158 253 ProSiteProfiles Ubiquitin domain profile. 1 60 IPR000626 GO:0005515
Arst8g02158 253 SUPERFAMILY Ubiquitin-like 10 74 IPR029071 -
Arst8g02158 253 Gene3D - 84 156 - -
Arst8g02158 253 Gene3D - 1 73 - -
Arst8g02158 253 ProSiteProfiles Ubiquitin domain profile. 85 156 IPR000626 GO:0005515
Arst8g02158 253 SUPERFAMILY Ubiquitin-like 167 247 IPR029071 -
Arst8g02158 253 CDD Ubl_ubiquitin_like 87 154 - -
Arst8g02158 253 SMART ubq_7 170 245 IPR000626 GO:0005515
Arst8g02158 253 SMART ubq_7 85 156 IPR000626 GO:0005515
Arst8g02158 253 SMART ubq_7 1 72 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g02158 Arst-Chr8 30357102 30357863 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g02158 85 155 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.111 2.18e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g02158 - - gmx:100781557 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g02158 8 30357102 30357863 Arst8g02158 8 30357102 30357863 ECH