Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g02116 ATGATCTCCAATATAGATTGGAGAGATGATTATTTGAGAAAGGGGCCTTGGACGCCGAGAGAGGACGCCATACTTATCGAGCAGGTAGAGAAGTGTGGCAAAGGTAATTGGAGTTTAATTCGAAAGAATTCTGAGTTGAGGAGAAGTGGCAAAAATTGTAGGCTTAGATGGTCGAACCATCTAAATCCTGACTTGAAGAAGGGTCCTTTCTCTGAAGAAGAGGAGAAAACCATTTATGATCTTCATGCTAAGTATGGAAACAAATGGGCTCTAATGGCTACCAAGGTTCCTGGAAGATCAGACAATGACATCAAAAATTTTTGGAACTCAAGAATGAAGAAGCGCCTAAGAGAATATCCTCCACAAATAACGGTTCAACAAGCACAACACTTTTCTTCATCACCATTTTATTCGGTCTTAGCTTCATGTTACCCTAAAAATAATCTCAGTGTTGAACTACCTTCAAACATTTCTGCTGCCAATCCTCCACCACATCATAATCAGAAACAACCTAATCGAAATAATTCTTCTTCATTCTCTTGCACCAATAATAATGCAAGTTTTGTATTGCCATTAACCCCTGTGTCTCCTTATTGTAAGAGTAGTGGTTTATTGAATGATGTGGTGATGGAGGGTATTGCTCTTTGTCGCAAGGGAAAGTCAAAGATGGATGCAACCATTGTTATTGGTAGGGAGGAAGAAGAATTAGCTGATAAGAGAAAAATTATTGAAGAGCCACCATTGCCACCAGTTGGAACCAGTAAAGAGGAAGAAACAGCCACCATTATTGCAACTCAAAGCTCTTCTCATCAATTAATTTCAACAGAGAAGAATGATAATGGAGGTTGTAACAATAATAAAGAGGCATTGAATAATTCTATGCCACAAATGGACGATGAATTGCTTAGCATACTTAAAAATTGTCCAATATATTCGCCAGTGCGAAAGTGGTACAAAGTTGATGATGATGAGGACTCCCTGATGATGATGATGGAGATTTGA 1002 0.3862 MISNIDWRDDYLRKGPWTPREDAILIEQVEKCGKGNWSLIRKNSELRRSGKNCRLRWSNHLNPDLKKGPFSEEEEKTIYDLHAKYGNKWALMATKVPGRSDNDIKNFWNSRMKKRLREYPPQITVQQAQHFSSSPFYSVLASCYPKNNLSVELPSNISAANPPPHHNQKQPNRNNSSSFSCTNNNASFVLPLTPVSPYCKSSGLLNDVVMEGIALCRKGKSKMDATIVIGREEEELADKRKIIEEPPLPPVGTSKEEETATIIATQSSSHQLISTEKNDNGGCNNNKEALNNSMPQMDDELLSILKNCPIYSPVRKWYKVDDDEDSLMMMMEI 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g02116 333 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Arst8g02116 333 SMART sant 66 114 IPR001005 -
Arst8g02116 333 SMART sant 13 63 IPR001005 -
Arst8g02116 333 CDD SANT 16 61 IPR001005 -
Arst8g02116 333 MobiDBLite consensus disorder prediction 155 179 - -
Arst8g02116 333 FunFam Transcriptional activator Myb isoform A 13 66 - -
Arst8g02116 333 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Arst8g02116 333 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 11 130 - -
Arst8g02116 333 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Arst8g02116 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Arst8g02116 333 Pfam Myb-like DNA-binding domain 17 76 - -
Arst8g02116 333 CDD SANT 69 109 IPR001005 -
Arst8g02116 333 Gene3D - 14 66 - -
Arst8g02116 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Arst8g02116 333 Gene3D - 68 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g02116 Arst-Chr8 29916598 29919912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g02116 12 126 MYB Transcription Factor Family AT2G32460 62.185 7.51e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Arst8g02116 Myb_DNA-bind_6 9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g02116 K09422 - ahf:112771967 570.466