Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g02113 ATGGTGCTTCATCCTCGTCCACGCCGTTCCAATGGGAACGACCAGCAGCCTGTAGCTGAAGCTGAAGCTGATGGCCAAGGCACCAGTGTTAACTATGCAGATATTCACACCTTATCTTCTGATTCTGATTCTGATTCTGATTCTGATTCTGATTCTATTGTATATTCAAATTCTAGTTACGAAGGATTGCTAGATAACTTCAATCAAGAACCAGGGTCAAGTAGTAGCAGTTGTGACACTTCTGATTATTATGAACATGGAAAAAGGCAAAAGCCAAAGTTCAGTAATGCAAGAAGTTCTCATGTGAAAAATAGAGGACCAAATGATGTTGATAGATGGGAAAATGACCAAGAAAGATGGATTGATGAGAATTTTTCAGAAGATGCTGACTTAGATAATCAGAATGAAGTATTGACAGAAACTGCTGAGGCATCTTCTGATCTGACTATGCCTTTACTTAGGTACCAAAAGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAATTCTGATACTAGAGGTGGCATCCTTGCAGATGAAATGGGAATGGGAAAGACGATTCAAGCAATAGCACTTGTCCTTGCCAAACGTGAATTGATGCAAAGTAGTTCTGCACCAGCTGAACCCATACTATCGCATTCACCTTCTTTATCTGGAATCTTGCCTGCGATCAAAGGAACACTTGTCATTTGTCCTGTTGTCGCTGTTACTCAGTGGGTTAATGAGATTGATCGGTTTACCATCAAAGGAAGCACCAAGGTGCTCGTTTATCATGGGGCAAGGAGAGGGAAGAGTATTGAACAGTTCTTGGATTATGATTTTGTGATAACTACGTACTCTACTGTTGAGTCTGAGTACAGGAAGTTTATGATGCCTCCTAAGGAAAAACAATCAAGGCAAGTTAAGAAGAAAACAGAAGTCACTAGAGGGATGTACAAAGAAGGTGTGAGTAAGATGTCTTGTAGTGAAAATGAACTGAGCATGGACGCAGAAGATGCAAATGCCACACACAGGGGTATGTCACTTCTTCATGCTGTTAAATGGCTGCGGATTATATTGGACGAGGCACACTACATAAAGTCCAGACATAGTAACACAGCAAAAGCAGTTCTTGCTTTAGAGTCTTCCTACAAATGGGCTTTAAGTGGCACTCCCATTCAGAACCGTGTTGGAGAACTGTATTCTCTGGTACGGTTCCTGCAAATAACTCCGTATTCATTTTACTTGTGCATGGACTGTGATTGCAGGACCCTTGATCACAGCTCCAAACAATGTCCAGACTGCAGCCACAGTTCAGTTAGACATTTCTGTTGGTGGAATAAATATGTTTCCACACCAATTCAATCCTCTCTAAGTAGCTATGGGCGGGGTAATAGAGCTATGGTCTTGCTTAAACACAAAGTTCTGAAGAACATACTACTAAGGCGCACTAAAATAGGCAGGGCTGCTGATCTTGCACTTCCTCCTAGAATTGTCTCACTGAGAAGGGATTGTCTGGATATAAAAGAGCAAGACTATTATGAGTCATTATACAATGAAAGTCAGGCACAATTTAATACGTATGTCGAATCTAATACACTGATGAATAATTATGCTCATATATTTGATCTTCTCACACGGCTGCGTCAGGCTGTTGATCATCCATACCTTGTGGTATATTCTCAAGCTGCAGCACGACAAGGTGGCCATGTGGCTAGTAATTCTACTGCTGAAGAACAAGCATGTGGCATTTGTCATGAACCAGTGGAAGATCCTGTGGTTACCTCTTGTGAGCATAGATTTTGCAAGACATGCTTGATAGATTTCTCTACTGCTTTGGGACAAGTATCATGCCCTTCATGCTCTCAATTACCTACTGTTGATTTAACTTCCCACAAGGATGTTGGGTACCAGGCAAATAAAACCACTATTAAGGGATTCAGATCCTCAAGCATTTTAGACAGAATTCAGCTTGAGAACTTTCAGACAAGTACTAAAATAGAGGCTTTGCGAGAAGAAATAAGATCTATGGTCGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGTCAGTTCACATCATTCTTGGATCTAATAAACTTCTCTTTGAATAAGTCTGGGGTGTCTTGTGTTCAATTGAATGGAAATATGACAATGACTGCCCGAGATGCTGCCATTAAGAGGTTTACCAATGATCCAGACTGCAGGATTTTTCTCATGAGCCTGAAGACCGGAGGCGTTGCACTCAATTTGACTGTAGCATCACATGTTTTCCTTATGGATCCTTGGTGGAACCCAGCTGCGGAGCGTCAGGCTCAAGACAGAATTCACCGAATAGGACAATTTAAACCTATAAGAATTGTGAGATTTATAATTGAGAACACTGTTGAGGAGAGGATTTTGAATCTGCAACAGAAGAAGGAACTAGTGTTTGAAGGGATTATAGGTGGCTCTTCTGATGCTCTGGGAAAACTGACGGAGGGAGACTTGAAATTCCTATTTGGTACATAG 2487 0.4133 MVLHPRPRRSNGNDQQPVAEAEADGQGTSVNYADIHTLSSDSDSDSDSDSDSIVYSNSSYEGLLDNFNQEPGSSSSSCDTSDYYEHGKRQKPKFSNARSSHVKNRGPNDVDRWENDQERWIDENFSEDADLDNQNEVLTETAEASSDLTMPLLRYQKEWLAWALKQENSDTRGGILADEMGMGKTIQAIALVLAKRELMQSSSAPAEPILSHSPSLSGILPAIKGTLVICPVVAVTQWVNEIDRFTIKGSTKVLVYHGARRGKSIEQFLDYDFVITTYSTVESEYRKFMMPPKEKQSRQVKKKTEVTRGMYKEGVSKMSCSENELSMDAEDANATHRGMSLLHAVKWLRIILDEAHYIKSRHSNTAKAVLALESSYKWALSGTPIQNRVGELYSLVRFLQITPYSFYLCMDCDCRTLDHSSKQCPDCSHSSVRHFCWWNKYVSTPIQSSLSSYGRGNRAMVLLKHKVLKNILLRRTKIGRAADLALPPRIVSLRRDCLDIKEQDYYESLYNESQAQFNTYVESNTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQAAARQGGHVASNSTAEEQACGICHEPVEDPVVTSCEHRFCKTCLIDFSTALGQVSCPSCSQLPTVDLTSHKDVGYQANKTTIKGFRSSSILDRIQLENFQTSTKIEALREEIRSMVERDGSAKGIVFSQFTSFLDLINFSLNKSGVSCVQLNGNMTMTARDAAIKRFTNDPDCRIFLMSLKTGGVALNLTVASHVFLMDPWWNPAAERQAQDRIHRIGQFKPIRIVRFIIENTVEERILNLQQKKELVFEGIIGGSSDALGKLTEGDLKFLFGT 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g02113 828 Gene3D - 293 493 IPR038718 -
Arst8g02113 828 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 658 818 IPR001650 -
Arst8g02113 828 Pfam Zinc finger, C3HC4 type (RING finger) 574 613 IPR018957 GO:0046872
Arst8g02113 828 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 475 IPR027417 -
Arst8g02113 828 Coils Coil 645 665 - -
Arst8g02113 828 SMART ring_2 574 613 IPR001841 -
Arst8g02113 828 Pfam SNF2-related domain 166 550 IPR000330 GO:0005524|GO:0140658
Arst8g02113 828 ProSitePatterns Zinc finger RING-type signature. 589 598 IPR017907 -
Arst8g02113 828 CDD SF2_C_SNF 656 783 - -
Arst8g02113 828 SMART ultradead3 148 420 IPR014001 -
Arst8g02113 828 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 43 827 - -
Arst8g02113 828 MobiDBLite consensus disorder prediction 49 81 - -
Arst8g02113 828 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 573 626 IPR013083 -
Arst8g02113 828 Gene3D - 497 826 IPR027417 -
Arst8g02113 828 Pfam Helicase conserved C-terminal domain 658 772 IPR001650 -
Arst8g02113 828 SUPERFAMILY RING/U-box 567 617 - -
Arst8g02113 828 MobiDBLite consensus disorder prediction 1 114 - -
Arst8g02113 828 ProSiteProfiles Zinc finger RING-type profile. 574 614 IPR001841 -
Arst8g02113 828 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 827 IPR027417 -
Arst8g02113 828 CDD DEXDc_SHPRH-like 152 475 - -
Arst8g02113 828 Gene3D - 123 292 IPR038718 -
Arst8g02113 828 SMART helicmild6 689 772 IPR001650 -
Arst8g02113 828 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 165 402 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g02113 Arst-Chr8 29826528 29833316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g02113 113 828 RAD5 or RAD16-like Gene Family AT1G05120 64.683 0.0 992
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst8g02113 SNF2_N 3.2e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g02113 K15083 - gmx:100786366 1120.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g02113 8 29826528 29833316 Arst8g02113 8 29826528 29833316 ECH