Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g02055 ATGAAGCGCCAGGTGCCCCTCCCTTCCACCAAACCGCCTTTTGCTCCCCCCGCAGACTACCATCGCTTCGCCACCGACCACCGCACAACTTCTCAGAACGACGCCGACGCCATTGCCGTTAAAACTCCTCAATTAAAGCGGAAGAGTGTTACAACTGATCTTGAAGGTGATTCTGGTAATGTGACTCCAGCATCCACTGAAGCAGTTAATAGTCCTTTCCGGACACCTATCTCGAGGAAGACGGGAAAGGCAAGCAAATCCTCTCGACTTACAAAATGCAACAGATCAGGATCTCAAATCCCTGGATCAAATATCAGTTCACCATCAGCAAATAATCTCGCACCTTCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCAGAGGATGGTATTCTTGATTTGAATAAAGCTGCTGAGACATTAGAGGTACAAAAGAGGAGGATATATGATATAACGAATGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTAAAGAACAGAATTCAATGGAAGGGACTGGATGTTTCAAGACCAGGGCAGGCTGTTGATAGTTTTGCTAGTTTACAGGCTGAAGTAGAAAATCTTACAAATGAGGAGCACCGGTTAGACGAGCAAATAAGAGAGATGCAAGAAAGATTAAGAGGTCTTAGTGAAGATGAAAACACTCAAAGGTATCTTTTTGTCACTGAGGAAGATATAAAGAGTTTGCCCTCATCTCAGAATGAAACCTTGATAGCAATTAAAGCTCCATATTGCACCACTTTGGAGGTCCCTGATCCTGATGAGGTTGTTGATTATCCTCAGAGGAAATACAGGATTATCCTGAGAAGCTCAACGGGCCCAATAGACGTTTATCTTCTTAGTCAATTTGAAGAGAAATTTGAGATTAATGGTGTTAATGTGGCCCCAAATATTCCATCAAGACCAGATTTCAATAAGCACCAATCAACAGTGGTCTCAAATGATAGAGGCAAGGACCTTGAAATGGGGATACAAGATGTATATAGGCCTTCAGATTTATCTAATTCACATGATTTTGCGGGTGGGATCACGAAGATTGTTCCTTCAGATTTTGAGAGTGACGCTGATTACTGGCTTTTATCGGATGCCGATGTTAGCATAACAGACATGTGGAGGACAGAACCCGGCGAAGTTGAATGGCATAATCTGGATACTCCAAAAGAAGATTATTGTATGACTCATGTGAGCCCACCACCTCCCCAAACCCCTCCCTCAAACATAAGTGAAGCACCTTCGGCATCTAACCCTCCTGTAGCTTGA 1320 0.4311 MKRQVPLPSTKPPFAPPADYHRFATDHRTTSQNDADAIAVKTPQLKRKSVTTDLEGDSGNVTPASTEAVNSPFRTPISRKTGKASKSSRLTKCNRSGSQIPGSNISSPSANNLAPSGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGQAVDSFASLQAEVENLTNEEHRLDEQIREMQERLRGLSEDENTQRYLFVTEEDIKSLPSSQNETLIAIKAPYCTTLEVPDPDEVVDYPQRKYRIILRSSTGPIDVYLLSQFEEKFEINGVNVAPNIPSRPDFNKHQSTVVSNDRGKDLEMGIQDVYRPSDLSNSHDFAGGITKIVPSDFESDADYWLLSDADVSITDMWRTEPGEVEWHNLDTPKEDYCMTHVSPPPPQTPPSNISEAPSASNPPVA 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g02055 439 SMART E2F_TDP_2 120 185 IPR003316 GO:0005667|GO:0006355
Arst8g02055 439 Gene3D - 114 187 IPR036388 -
Arst8g02055 439 MobiDBLite consensus disorder prediction 54 112 - -
Arst8g02055 439 CDD E2F_DD 196 302 IPR032198 GO:0046983
Arst8g02055 439 Coils Coil 136 156 - -
Arst8g02055 439 FunFam E2F transcription factor 1 114 187 - -
Arst8g02055 439 Pfam E2F/DP family winged-helix DNA-binding domain 122 185 IPR003316 GO:0005667|GO:0006355
Arst8g02055 439 PANTHER TRANSCRIPTION FACTOR E2F 63 398 IPR015633 GO:0000978|GO:0006357
Arst8g02055 439 Coils Coil 198 232 - -
Arst8g02055 439 MobiDBLite consensus disorder prediction 413 439 - -
Arst8g02055 439 Gene3D - 194 302 - -
Arst8g02055 439 MobiDBLite consensus disorder prediction 1 112 - -
Arst8g02055 439 SUPERFAMILY "Winged helix" DNA-binding domain 120 183 IPR036390 -
Arst8g02055 439 Pfam E2F transcription factor CC-MB domain 201 300 IPR032198 GO:0046983
Arst8g02055 439 SUPERFAMILY E2F-DP heterodimerization region 199 301 IPR037241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g02055 Arst-Chr8 29195337 29199844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g02055 2 439 E2F-DP Transcription Factor Family AT5G22220 53.291 9.55e-141 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Arst8g02055 E2F_CC-MB 2.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g02055 K06620 - gmx:100819817 613.224