Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g02050 ATGGTGGACACGGATTCAAGCGAAGCACACATGTCAATAGCAGCTTCTTCCATATTCCCTGGCTTCAGGTTCTGTCCCACTGACGAGGAGTTGATCTCTTATTACCTCAGGAAAAAGCTGGACGGTGATGAAGACAGTGTTCAAGTCATTTCGGAGCTTGAACTTTGCACTTTTGAGCCTTGGGATTTGCCAGGAAAATCTTTCATTCAATCAGACACCGAGTGGTTTTTCTTCTCGCCACGGGGGAGAAAGTATCCCAATGGTTCACAGAGTAAAAGGGCAACTGAATGTGGGTATTGGAAGGCCACAGGAAAAGAACGCATCGTAAAATCCGGTCAGGATGTTATTGGTACCAAACGCACTTTAGTATTTCATCTTGGTCGAGCTCCTAAAGGCGAAAGAACTGAATGGATTATGCATGAGTACTGTGTCAATGACAAATCTCAGGATTCATTGGTGATTTGTCGGCTGAAGAAAAATACAGAATTTCGTGCTAATGATCATTCTAATAAAACTTCACATGATAGTGATTGTGGAGTCTCAGAAGAAGTTACAGTTCAAGGGGGCACTTATGTGCCTATTCAAGATAAAGAAACTGGATGCAGCTCCAAGAGAACTAGCAGTAGTAATAGTTCTCCTTCTACTACTACTGGCCAAATTGAATCCAGTCATAGAGTTGTCAATGAAGCCAATCAAGCCAATGAAGTCAACATAGCAAATGAAACCAATCAACCAATGTAGCCAATCAAGCCAATCCCAGAAATCACCCTCAGGTGGACGAAGATGATTGTTATGCAGAGATCCTAAATGATGATATCATCAAGTTAGATGAATCAACACTCTCACGGCCATCGCCACCACAAGGGACAGCAAACAGGAGAATCAGGCTAAGGGTTCCCAAATCAACAGTTCCCAAATCAAGGGTTCCCAAATCAACGGTTCCAACAGGAAATGGTTGCCATTGCTCCAAGCAATCATCAAACAAAATTAACACCTTCCTGCCATATGCTTTGGTGGTCTTCACTTTCTTCGTTTTCACTTTGTTAGCTCTAGGCTTCTTTCTTATTATTAGGAGGTCCCAAACTACTGCGCAATATTCTCGAGACCTCTCTAGAGTTAATTAA 1124 0.4244 MVDTDSSEAHMSIAASSIFPGFRFCPTDEELISYYLRKKLDGDEDSVQVISELELCTFEPWDLPGKSFIQSDTEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERIVKSGQDVIGTKRTLVFHLGRAPKGERTEWIMHEYCVNDKSQDSLVICRLKKNTEFRANDHSNKTSHDSDCGVSEEVTVQGGTYVPIQDKETGCSSKRTSSSNSSPSTTTGQIESSHRVVNEANQANEVNIANETNQVNEAIETNVANEVNIANEVNQVNQANEVNVANEVNIANETNQLNEANETIQLNEANEANVANEVNIGNEVNQANEVNIVHEANQVNQANQANVANQANPRNHPQVDEDDCYAEILNDDIIKLDESTLSRPSPPQGTANRRIRLRVPKSTVPKSRVPKSTVPTGNGCHCSKQSSNKINTFLPYALVVFTFFVFTLLALGFFLIIRRSQTTAQYSRDLSRVN 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g02050 464 Coils Coil 280 300 - -
Arst8g02050 464 Gene3D NAC domain 27 165 IPR036093 GO:0003677|GO:0006355
Arst8g02050 464 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 265 - -
Arst8g02050 464 MobiDBLite consensus disorder prediction 196 223 - -
Arst8g02050 464 ProSiteProfiles NAC domain profile. 18 160 IPR003441 GO:0003677|GO:0006355
Arst8g02050 464 Pfam No apical meristem (NAM) protein 20 143 IPR003441 GO:0003677|GO:0006355
Arst8g02050 464 MobiDBLite consensus disorder prediction 194 223 - -
Arst8g02050 464 SUPERFAMILY NAC domain 10 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g02050 Arst-Chr8 29127143 29129274 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g02050 6 166 NAC Transcription Factor Family AT2G27300 70.807 7.53e-86 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Arst8g02050 NAM 2.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g02050 - - adu:107462050 817.764