Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst8g02035 | ATGGAGGATCCACCAACTGGTTTTCGGTTCTATCCAACAGAAGAAGAGCTAGTTGCTTTCTACCTAAACACCCAGCTTCAACTACAAGGCCACACGACTCACATCAACAGGGTCATTCCAGTGGTTGACATCAATGGCGTTGAGCCCTGGACTCTTCCATCAAGTGATCGGAGTGAAGAAAACCATGGTTTTCTACAAAGGAAAAGCTCCCACCGGTCGCAAAACTAAATGGAAGATGCATGAATACCGCGCCATCGTTCAAGCCCCTAACCAATCTCCCACGGCTATTCCTCAGTTGAGGCACGAATTCAGCTTGTGTCGCGTGTACGTGATATCCGGAAGCTTCAGAGCATTTGATCGACGGCCACGGGAGGTGGTAGTGCCAAGAGTTCTTCATCATGGTTCTTCTACAACAAGTGCTCAGCAGCATCAAGGAGAATCATCAGCAAGGGTGCAGGCCAATAATAATAATAATGGGTCGAGCTCGTCGGAAACTTCCCTTTCATCAGGTGGTCCTGATTTGCCACCAGATACTGGAGGAGGAGGGTCATGTAGCAATTGGAATAGTAGTGAGGTTCAAGTTCAAGCTCAAGTTCAAGAACCACTATGGGAATGGGAACAACTCGATTGGCTATAA | 637 | 0.4772 | MEDPPTGFRFYPTEEELVAFYLNTQLQLQGHTTHINRVIPVVDINGVEPWTLPSLAGELCREEKEQWFFFVPRQEREARGGRINRTTASGYWKATGSPGYVYSSDNQVIGVKKTMVFYKGKAPTGRKTKWKMHEYRAIVQAPNQSPTAIPQLRHEFSLCRVYVISGSFRAFDRRPREVVVPRVLHHGSSTTSAQQHQGESSARVQANNNNNGSSSSETSLSSGGPDLPPDTGGGGSCSNWNSSEVQVQAQVQEPLWEWEQLDWL | 264 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst8g02035 | 264 | MobiDBLite | consensus disorder prediction | 185 | 245 | - | - | |
| Arst8g02035 | 264 | MobiDBLite | consensus disorder prediction | 185 | 225 | - | - | |
| Arst8g02035 | 264 | Gene3D | NAC domain | 13 | 167 | IPR036093 | GO:0003677|GO:0006355 | |
| Arst8g02035 | 264 | SUPERFAMILY | NAC domain | 4 | 162 | IPR036093 | GO:0003677|GO:0006355 | |
| Arst8g02035 | 264 | Pfam | No apical meristem (NAM) protein | 5 | 136 | IPR003441 | GO:0003677|GO:0006355 | |
| Arst8g02035 | 264 | ProSiteProfiles | NAC domain profile. | 4 | 164 | IPR003441 | GO:0003677|GO:0006355 | |
| Arst8g02035 | 264 | PANTHER | PROTEIN CUP-SHAPED COTYLEDON 2-RELATED | 4 | 211 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst8g02035 | Arst-Chr8 | 29022753 | 29024145 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst8g02035 | 7 | 263 | NAC Transcription Factor Family | AT5G22380 | 54.651 | 5.12e-85 | 252 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | NAC | Arst8g02035 | NAM | 2.7e-31 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst8g02035 | - | - | gmx:100780264 | 319.316 |