LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst8g02015	ATGTATCATCATCAAGGGAAGAACATGCACTCTTCTTCAAGAATGCCAATCCCCTCTGAGAGGCACATGTTCCTTCAAACAGGAAACGGGTCTGGTGATTCTGGACTTGTTCTCTCAACTGATGCTAAGCCACGATTGAAATGGACGCCGGATCTTCATGCCAGGTTCATAGAAGCAGTGAACCAGTTAGGTGGAGCTGACAAAGCAACTCCAAAAACAGTAATGAAACTCATGGGGATTCCAGGTCTTACTTTATATCATCTGAAGAGCCATCTGCAGAAGTACAGATTGAGCAAGAATTTGCATGGACCAAATAACACTGTAACACACAAAATCACAGCAACAAATGTGGGGGCAACAACAAGTGAAAGATCACTTTCAGAACCCAGTGGAACTCATATGAACAAGTTAAGCCTTGTCCCACAGACTAACAACAGAGATTTACATATAAGTGAGGCACTGCAGATGCAAATTGAAGTGCAGCGAAGGCTAAATGAACAACTTGAGGTACAAAGACACTTGCAGCTTCGGATAGAGGCACAAGGAAAATACCTGCAGTCTGTGCTAGAGAAAGCTCAAGAGACACTTGGTAGACAAAATTTGGGAATGGTAGGACTTGAAGCTGCTAAAGTTCAACTATCAGAGCTGGTGTCCAAGGTCTCCTCCCAGTGCTTGAACTCGGCATTTTCAGAGCTGAAGGAACTACAAGGATTTTGCCCCAAGCAACCACAAACCAACCAGCCAAATGATTGCTCAATAGATAGTTGCCTCACATCTTGTGAAGGGTCACAGAAGGAGCAAGAGATACAGAATGGTGGGATAGGTTTAAGGCACTTAAATGGCCATGGCCATGCATTCATGGAAAGAAAGGGAGGCACAGAAGCTCCTAAATGGAGTAATGAAGTGAAAAACAACACCTTTCTAGCTCCATTAGGCAAGAATTCAGAAAGAAGTAGCTATGGTGCAGAGAGAAGCAGTGGAAACTTGTCTATGAGCATTGGACTTGAAAGGGAAACTGAGAATGGAAGCAGCATGTACACTGAGAGTCACACTCACACAGATGGTGAGTTCTGGCACAGAAACAGCAATAGGACAGAACCAAAGAATGAAGCAATGGATGGAGGAAGAGGTTCCCATGATTATAGGTTGCCTCCTCCATACTTTTCAGCAGCAAGATTGGACTTAAACTCACATGGGGATAACAATGAAGCTGCAACAACAACAACAAGCTGTAAACAACTGGACTTGAACAGATTCAGTTGGAGCTGA	1269	0.4381	MYHHQGKNMHSSSRMPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGPNNTVTHKITATNVGATTSERSLSEPSGTHMNKLSLVPQTNNRDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGMVGLEAAKVQLSELVSKVSSQCLNSAFSELKELQGFCPKQPQTNQPNDCSIDSCLTSCEGSQKEQEIQNGGIGLRHLNGHGHAFMERKGGTEAPKWSNEVKNNTFLAPLGKNSERSSYGAERSSGNLSMSIGLERETENGSSMYTESHTHTDGEFWHRNSNRTEPKNEAMDGGRGSHDYRLPPPYFSAARLDLNSHGDNNEAATTTTSCKQLDLNRFSWS	422

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Arst8g02015	422	MobiDBLite	consensus disorder prediction	345	380	-	-
Arst8g02015	422	Coils	Coil	151	171	-	-
Arst8g02015	422	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	43	98	IPR006447	GO:0003677
Arst8g02015	422	SUPERFAMILY	Homeodomain-like	42	98	IPR009057	-
Arst8g02015	422	MobiDBLite	consensus disorder prediction	352	377	-	-
Arst8g02015	422	FunFam	Myb family transcription factor	42	100	-	-
Arst8g02015	422	Pfam	MYB-CC type transfactor, LHEQLE motif	149	195	IPR025756	-
Arst8g02015	422	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	40	100	IPR017930	-
Arst8g02015	422	Gene3D	-	42	100	-	-
Arst8g02015	422	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR PHL11	6	323	IPR044848	GO:0003700

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst8g02015	Arst-Chr8	28864566	28866857	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst8g02015	75	421	G2-like Transcription Factor Family	AT3G04030	49.577	1.50e-89	272

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-G2-like	Arst8g02015		Myb_DNA-binding	3.7e-08	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst8g02015	-		-	gmx:100810396	612.453

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