Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g02006 ATGAATACCGTCGGATTTCGGGTGGGTTACAAGGATAGAGGTCAGGAACTTTACCAGATTGATGACCCAACTCCTTTGAAAATAGTGATTAATACTTGTGAGGCGATCATCCTTAGGTCGGCTGTTACGGATGATGACATAATTGACCTTGGAATAGATGACGACGTACTACCACGTGAGAACGACGATCTTCATGAAGAAGATGAGGTTTATGGCGACGAAGAAGAGGAAGACGAGGAAAACACCAACAACAACCACAACAACAAGAATTTATACCGTCACAATAATAATAACAATCCAAGTTTCATTGAGTGGCTCAAACCATCTTCATCTCTAACTAGTTCACTATTTTTATCATCACAAACTCCACCTCCCTGTGTGACTGATGAACACCGAGAAACTATAGAGTTTTTTCCCATTTTGAAGGCTTCAGAGGGAGAGCATGGAGTGGGGAACAATCATCATCATCATCAGAAGGAAGAAGAAGAAGAAGGTATTGAGGTGAAAGAAGAGAAGGTGGAACAACAACAACAGTTGATGACTGTGGCTTTGCACATTGGATTACCAACAAACAACACAGTAGGAGTTGTTGCTGCTGATGATGATGAGAAAAAGAAGGTTTTGCATGTTAAGGAGGAGGAAGAAAAAGAAAAAGAAGAAGAAGAAGCAGAAGAAGAAGAAGAAGAAAAGTTATTGGAGAGAAGATTATTGGAGAATTGGTGGTTAAAGCAGGAAGAGAATAAGAGGTTTTGGATACCAAGTCCTTCACAAATCCTTGTTGGACCTATGCAGTTTGCTTGCTCTATTTGCAACAAAACTTTCAACAGATATAACAATATGCAGATGCATATGTGGGGGCATGGTTCGGAATTCAGGAAAGGGCCAGACTCACTGAGAGGAACACAACCTGCGGCAATGCTAAGGCTACCATGTTATTGTTGTGCACAAGGTTGCAAGAACAACATCAACCATCCAAGGGCAAAGCCATTGAAGGATTTCAGAACTCTGCAAACACACTACAAGAGAAAGCATGGCACCAAGCCCTTTATGTGTAGAAAGTGTGGCAAAACCTTTGCTGTTAAAGGTGATTGGAGGACTCATGAGAAGAACTGTGGTAAGCTTTGGTATTGCACTTGTGGTTCCGATTTCAAGCATAAGAGGTCCCTTAAGGATCACATTAGATCCTTTGGTAAGGGTCACTCTCCTCATCCTTCTCTTGAAGGTTTTGAGGATGAGAAGGAATGCATTACCACTGGCTCTGATGAAGATGAACTTAAGTAG 1281 0.4153 MNTVGFRVGYKDRGQELYQIDDPTPLKIVINTCEAIILRSAVTDDDIIDLGIDDDVLPRENDDLHEEDEVYGDEEEEDEENTNNNHNNKNLYRHNNNNNPSFIEWLKPSSSLTSSLFLSSQTPPPCVTDEHRETIEFFPILKASEGEHGVGNNHHHHQKEEEEEGIEVKEEKVEQQQQLMTVALHIGLPTNNTVGVVAADDDEKKKVLHVKEEEEKEKEEEEAEEEEEEKLLERRLLENWWLKQEENKRFWIPSPSQILVGPMQFACSICNKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFEDEKECITTGSDEDELK 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g02006 426 ProSiteProfiles Zinc finger C2H2 type domain profile. 349 369 IPR013087 -
Arst8g02006 426 Pfam Zinc finger, C2H2 type 265 284 IPR013087 -
Arst8g02006 426 ProSitePatterns Zinc finger C2H2 type domain signature. 267 287 IPR013087 -
Arst8g02006 426 PANTHER ZINC FINGER PROTEIN WIP2 112 414 IPR043584 GO:0003700|GO:0010468
Arst8g02006 426 SUPERFAMILY beta-beta-alpha zinc fingers 335 369 IPR036236 -
Arst8g02006 426 MobiDBLite consensus disorder prediction 397 426 - -
Arst8g02006 426 Coils Coil 159 179 - -
Arst8g02006 426 SMART c2h2final6 312 344 IPR013087 -
Arst8g02006 426 SMART c2h2final6 265 287 IPR013087 -
Arst8g02006 426 SMART c2h2final6 349 369 IPR013087 -
Arst8g02006 426 ProSiteProfiles Zinc finger C2H2 type domain profile. 265 292 IPR013087 -
Arst8g02006 426 SUPERFAMILY beta-beta-alpha zinc fingers 244 288 IPR036236 -
Arst8g02006 426 MobiDBLite consensus disorder prediction 66 81 - -
Arst8g02006 426 MobiDBLite consensus disorder prediction 55 95 - -
Arst8g02006 426 FunFam Zinc finger protein WIP2 318 400 - -
Arst8g02006 426 Coils Coil 204 238 - -
Arst8g02006 426 Gene3D Classic Zinc Finger 347 396 - -
Arst8g02006 426 Gene3D Classic Zinc Finger 264 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g02006 Arst-Chr8 28779244 28789297 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g02006 99 418 C2H2 Transcription Factor Family AT1G08290 52.874 3.09e-119 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst8g02006 zf-C2H2_6 0.00015 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g02006 - - adu:107461774 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g02006 8 28779244 28789297 Arst8g02006 8 28779244 28789297 ECH