Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01936 ATGGCTCGTGGAAGAATTCAGTTGAAGAGAATAGAGAACCCGGTTCACAGGCAAGTTACCTTCTGCAAGCGCCGAGCTGGGCTTCTCAAGAAGGCTAAGGAGCTCTCTGTCCTTTGCGACGCTGAAATTGGCCTTGTCATTTTCTCCGCTCATGGCAAGCTCTATGAACTCGCCACTAAAGGAACCATGCAAGGAGTGATAGAGAGGTACATGAAGTTTACTGGGGCGGCTCAGCCTGAAGAACCACCAACTGAACCGCATCATCATCCTCTTGTATGTCTCATCTCTCTCTCTTTCTCTTTTATGTTAATTAAGTAG 318 0.4748 MARGRIQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELATKGTMQGVIERYMKFTGAAQPEEPPTEPHHHPLVCLISLSFSFMLIK 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01936 105 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Arst8g01936 105 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Arst8g01936 105 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst8g01936 105 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Arst8g01936 105 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Arst8g01936 105 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Arst8g01936 105 Gene3D - 15 78 IPR036879 GO:0003677|GO:0046983
Arst8g01936 105 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 78 - -
Arst8g01936 105 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst8g01936 105 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst8g01936 105 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01936 Arst-Chr8 27858337 27859206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01936 1 84 MADS-box Gene Family AT1G71692 77.381 1.47e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Arst8g01936 SRF-TF 6.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01936 - - gmx:100815314 151.754