Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01929 ATGGAGATGGAATTAGGCATAGGCACGGAAGAGTTTCTTAACGATGCTTCCCACATCGCCAAGGGAAAGCGCACCAAGAGGCACAAACCCTTCTCCCCTTGCGACGTCGCCGCCATCACTTCCAGCTCCTCAAGCGCCAACGACTCTGCTTCCTTCTCTTCCACCACCACCTTTCAAGACGAAGAACAAGACATGGCTAACTGCTTGATTCTCCTTGCTCAAGGAAAAACAGGCGGAGAAGAAACCGATGATGAAGAAGATAACAAGATGAGAGAGAAGAGCAGAAGAATATCGGAGGTCACGACAACCGCAACTACAAAAATCGGTTTTTACATCTATGAATGCAAAACGTGCAACCGAACATTCCCTTCTTTTCAAGCTCTTGGAGGCCATAGGGCCGGCCATAAAAAGCCAAAGGTCACATCAGATGACAAAAAGAAACCGCAACCACAACCACAACCACAACCAAATACTTTGGCGCTAATCACAAATTGCGACTTTGAAGAAACAAAGCAAGTACGTGTGATGACAACAAGCCCTCCAATTTCCCTTCAATTGGGATATGGTGGTGCTACCAACAACAATAACGGCAAGCCCAAGATTCATGAGTGTTCAATTTGCGGTTCAGAATTCACATCTGGACAAGCCCTTGGTGGTCACATGAGGAGGCATAGGACAGCTGTCATCACTACTACTAGTCCTCAGCCAACTTGTGACGTGCCTGCCAGGCTGGAGGTCGTTAAGCCGCCGCGGAATCTTCTGGAATTGGATCTTAACCTTCCGGCGCCGGCGGACGACGACCACCACCACCGGGATTCCCAGTTTCAGTTCTCGTCCACACAGAAAACCATGATGCTTTCTGCTGCACCGCCTTTGGTGGATTGTCATTATTAA 894 0.4866 MEMELGIGTEEFLNDASHIAKGKRTKRHKPFSPCDVAAITSSSSSANDSASFSSTTTFQDEEQDMANCLILLAQGKTGGEETDDEEDNKMREKSRRISEVTTTATTKIGFYIYECKTCNRTFPSFQALGGHRAGHKKPKVTSDDKKKPQPQPQPQPNTLALITNCDFEETKQVRVMTTSPPISLQLGYGGATNNNNGKPKIHECSICGSEFTSGQALGGHMRRHRTAVITTTSPQPTCDVPARLEVVKPPRNLLELDLNLPAPADDDHHHRDSQFQFSSTQKTMMLSAAPPLVDCHY 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01929 297 ProSitePatterns Zinc finger C2H2 type domain signature. 204 224 IPR013087 -
Arst8g01929 297 SMART c2h2final6 113 135 IPR013087 -
Arst8g01929 297 SMART c2h2final6 202 224 IPR013087 -
Arst8g01929 297 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Arst8g01929 297 MobiDBLite consensus disorder prediction 128 158 - -
Arst8g01929 297 SUPERFAMILY beta-beta-alpha zinc fingers 112 224 IPR036236 -
Arst8g01929 297 Gene3D Classic Zinc Finger 111 224 - -
Arst8g01929 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Arst8g01929 297 PANTHER ZINC FINGER PROTEIN ZAT5 43 281 - -
Arst8g01929 297 MobiDBLite consensus disorder prediction 75 98 - -
Arst8g01929 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 202 224 IPR013087 -
Arst8g01929 297 MobiDBLite consensus disorder prediction 78 98 - -
Arst8g01929 297 Pfam C2H2-type zinc finger 113 138 - -
Arst8g01929 297 Pfam C2H2-type zinc finger 202 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01929 Arst-Chr8 27749406 27750612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01929 5 297 C2H2 Transcription Factor Family AT2G28200 40.125 3.73e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst8g01929 zf-C2H2_6 4.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01929 - - aprc:113858527 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g01929 8 27749406 27750612 Arst8g01929 8 27749406 27750612 ECH
Arst8g01929 8 27749406 27750612 Arst3g00105 3 744033 745364 ECH
Arst8g01929 8 27749406 27750612 Arst3g00105 3 744033 745364 PCT