Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01868 ATGTCTGAGGATGTTGGTAATAATATGAAGGACTCTTGGTTTTTCGAGAAGAATTTTAATGGCCTGTCCGACGAGGCTTTTGATGATGTCTTCAGCTTTTTAGATTTCCCGTTGGAAGATGTGGAACCGAATGTTGTTGAAGAAGACTGGGATGCTCAGTTTAAACGCATTGAGCCATGTTATGATGTTTTTTCGGTGTCATCGACTGTGCTCTGTAGTGATAAAACCCAAAATGAAAAGCCACAACTTGGGGGAAGTTTCTCTGGTTCTAGTAATGAGGTTTCTCCAATAAAACAGCTGGATGAGACTGCTGGATTGGATGTTGGAAAAACCATTCTGAACCAGAATTCATCTCTCAATGGAAAAGATTTGCATCAACTTCGAACCTACAGCCCAGTTTCTGTTTTTGAAAGCAGTAGTACTTCTTCAGCTGAGAATTCCAACCTTGATCTACCTGCCATCCCGGTAAAGCGTGCTCGAAGCAAGCGCCAGCGTGCATCAAGCTTCAGTCCTCTATTTGTGATTCCTTCTGTTCCTACTTCACCGGCTTGGCAAATTTATGAAATGAAAGTTGACCCGGAATCAAATTTAGGGACACACCATGCCGGGAAATCATTAAACAACACAAAAAAACAGAGGAAAAGGGATCTCCCTGTGCTTTCAGGTCACAATGACATGAAAAGATCCTCATCACAGGAGCCAGTTCCCACCAGAAAATGCATGCATTGCGAGGTGACAAAGACCCCACAGTGGAGAGAGGGACCGATGGGTCCAAAGACGCTGTGCAATGCCTGCGGTGTTCGATACAGGTCTGGTCGCCTCTTCCCCGAATATCGACCAGCAGCTAGCCCCACTTTTGTACCATCAGTGCATTCAAACTGTCATAAGAAGGTCATAGAGATGAGAAGCAAAGGCATCCAGGCAAGCCTTAGGAATCCATTGTCAGCGATGTCGAACCTTCATGGAAATTCTGTAGGATAA 981 0.4465 MSEDVGNNMKDSWFFEKNFNGLSDEAFDDVFSFLDFPLEDVEPNVVEEDWDAQFKRIEPCYDVFSVSSTVLCSDKTQNEKPQLGGSFSGSSNEVSPIKQLDETAGLDVGKTILNQNSSLNGKDLHQLRTYSPVSVFESSSTSSAENSNLDLPAIPVKRARSKRQRASSFSPLFVIPSVPTSPAWQIYEMKVDPESNLGTHHAGKSLNNTKKQRKRDLPVLSGHNDMKRSSSQEPVPTRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVPSVHSNCHKKVIEMRSKGIQASLRNPLSAMSNLHGNSVG 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01868 326 CDD ZnF_GATA 239 286 IPR000679 GO:0006355|GO:0043565
Arst8g01868 326 MobiDBLite consensus disorder prediction 195 235 - -
Arst8g01868 326 Gene3D - 231 313 IPR013088 GO:0006355|GO:0008270
Arst8g01868 326 PANTHER GATA TRANSCRIPTION FACTOR 46 309 - -
Arst8g01868 326 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 295 - -
Arst8g01868 326 ProSitePatterns GATA-type zinc finger domain. 240 265 IPR000679 GO:0006355|GO:0043565
Arst8g01868 326 ProSiteProfiles GATA-type zinc finger domain profile. 234 270 IPR000679 GO:0006355|GO:0043565
Arst8g01868 326 SMART GATA_3 234 284 IPR000679 GO:0006355|GO:0043565
Arst8g01868 326 FunFam GATA transcription factor 229 315 - -
Arst8g01868 326 Pfam GATA zinc finger 240 273 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01868 Arst-Chr8 27021013 27025197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01868 16 304 C2C2-Gata Transcription Factor Family AT1G08010 41.638 5.30e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Arst8g01868 GATA 3.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01868 - - gmx:100813303 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g01868 8 27021013 27025197 Arst8g01868 8 27021013 27025197 ECH
Arst8g01868 8 27021013 27025197 Arst3g00201 3 1398090 1401703 PCT