LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst8g01826	ATGGAAATTGATCTGAACCATGCAGTGACTGAGGTTGAAAAGAATGCAACTTGCAATGGTGGCTGTCACAAAGAACAAGCAACTGCTTCTTGTGTGTGCTGTGTGCCATCATCATCATCATCATCATCGTCCACTGCTGTGTCTTCTTCTTCGTATCTGGAGCTATGGCATGCTTGTGCTGGCCCTCTTACTTCTCTCCCAAAGAAGGGGAATGTGGTTGTCTACTTCCCACAAGGGCACTTAGAGCAAGCTGCATCTTTCTCTCCCTTCACACCATTGGAGATTCCAACACATGATCTTCAACCACAGATCTTCTGTAGAGTTGTCAATGTCCAACTACTTGCCAATAAGGAGAATGATGAGGTTTACACACAGGTCACTTTGCTTCCCCAGGCTGAGTTGGCAGGGATGGGGAAAGAGCTTCTTGAGGAATTGGGAGCTGATGAAGAAGGAAATGGAAGAACACCTACAAAAACAACACCTCACATGTTCTGCAAGACACTCACAGCCTCTGATACAAGCACTCATGGTGGTTTCTCTGTTCCTCGTAGAGCTGCTGAAGATTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGACCCTCTCAAGAGCTTATTGCAAAAGACCTGCATGGTGTGGAGTGGAAATTTCGCCATATTTACAGAGGTCAGCCGAGGCGGCATCTACTCACTACCGGATGGAGTATTTTCGTTAGCCAAAAGAATCTTGTGTCCGGTGATGCTGTGCTTTTCCTAAGGGGTGAAAATGGAGAATTGAGATTGGGAATCAGAAGAGCTGTTCGACCAAGAAATGGTCTTCCTGAGTCTATTGTTGGTAACCAGAGTTGTTATCCCAATTTCCTTTCTTCTGTGGCTAATGCTATATCAGCAAAAAGCATGTTTCATGTTTTCTACAGTCCAAGGGCAAGTCATGCAGATTTTGTTGTATCCTATCAAAAGTACGCCAAAAGCATCAAGAATCCGGTGACCATTGGCACAAGATTCAAAATGAAATTTGAGATGGATGAATCACCTGAAAGAAGGTGTACTAGTGGGATAGTGACTGGAATGAGTGATTTGGATCCATACAGATGGCCTAAATCAAAATGGAGGTGCTTAATGGTCAGATGGGATGAGGATATGGAGACTAATCATCAGGATCGAGTATCTCCATGGGAGATCGATCCTTCGGCTTCTCTCCCTCCATTGAGCATGCAGTGTTCCCCAAGGCTGAAGAAACTGCGGACAGGTCTGCAGGCTGCATCATCCAGTCACCTCATCACTGGAGGCACTGGGTTTATGGACTTGGAGGAGTCTGTAAGATCGCCCAAGGTCTTGCAAGGTCAAGAAAATACAGGTTTTATGTCCCTATATTTTGGACGTGACACAGTAACTAAGCAGCCAGGTTTTGAGATCAGTTCTCCCAATCATCCGAATCTTGCATCGGCCGGAGCAAGAAAGATGACTGCTGCTGAGCTTATGAGGGTTCACCCTCCTACTTATGCAGGCTTTGTGGAACCTAATAATAGGTTTCCGAGGGTCTTGCAAGGTCAAGAAATATGTCCACTAAGGTCCCTGACAGGGAAGGTTGATATGAATCTCGGTGCTTGGGGTAATAAACCAAGTAGTGCAAGTTGCACAACTTTCAACCTGCATCAAGCTACCAGACCAAAATTTGATTCTTTAGGATCAGAAGTCCTTCAAACTGCATATTTTCCTTATGGTGATATTCACAAAGCTGGTCATGGTAGCAGCATGTTGTGCTCTAAACCGTCGAGTTTCCAAAGAGATATTGCGCCGTTTAACACTCCTCTGACTCAGGCAGGGATAATTAGAAATGAAATTGGAAGGTCTGGCCCTTCAATCATGCATGAGCAGAAGCTGCCGGAGAATGTTTCCGCGGTTTCTTCTTTAGGGGGAAACAGCATGAGGATGCCAGTTCCGGATGAAGAGAATCTCAAGGGGAAGATAAATGGATGTAAACTATTTGGAGTTGCCTTGTCTGGAGAAACTACCACCCAAAATGCTAAAAGGAGCTGCACAAAGGTTCACAAGCAAGGCAGCTTAGTTGGAAGAGCAATCGATCTCTCAAGATTGAGCAGCTACACTGATCTCTTCACTGAACTTGAGAGACTCTTTGGCATGGAAGGCCTACTAAGAGATCCTGATAAGGGATGGAGGATCCTGTACACCGACAACGAAAACGACATCATGGTTGTCGGGGATGACCCGTGGCATGAGTTCTGCAATGTGGTATCAAAGATTCATATATATACGCAAGAGGAAGTGGAGAAGATGACAATTGGGATTATCAGTGATGATACACAGAGCTGTTTGGAACAGGCACCAGTCAATATGGAGGCTTCTAAGTCTTCCTCGGTGGGTCAGCCAGATTCTTCCCCAACAGTAGTTAGAGTCTAG	2418	0.4529	MEIDLNHAVTEVEKNATCNGGCHKEQATASCVCCVPSSSSSSSSTAVSSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQAASFSPFTPLEIPTHDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELAGMGKELLEELGADEEGNGRTPTKTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNGLPESIVGNQSCYPNFLSSVANAISAKSMFHVFYSPRASHADFVVSYQKYAKSIKNPVTIGTRFKMKFEMDESPERRCTSGIVTGMSDLDPYRWPKSKWRCLMVRWDEDMETNHQDRVSPWEIDPSASLPPLSMQCSPRLKKLRTGLQAASSSHLITGGTGFMDLEESVRSPKVLQGQENTGFMSLYFGRDTVTKQPGFEISSPNHPNLASAGARKMTAAELMRVHPPTYAGFVEPNNRFPRVLQGQEICPLRSLTGKVDMNLGAWGNKPSSASCTTFNLHQATRPKFDSLGSEVLQTAYFPYGDIHKAGHGSSMLCSKPSSFQRDIAPFNTPLTQAGIIRNEIGRSGPSIMHEQKLPENVSAVSSLGGNSMRMPVPDEENLKGKINGCKLFGVALSGETTTQNAKRSCTKVHKQGSLVGRAIDLSRLSSYTDLFTELERLFGMEGLLRDPDKGWRILYTDNENDIMVVGDDPWHEFCNVVSKIHIYTQEEVEKMTIGIISDDTQSCLEQAPVNMEASKSSSVGQPDSSPTVVRV	805

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst8g01826	805	ProSiteProfiles	B3 DNA-binding domain profile.	164	266	IPR003340	GO:0003677
	Arst8g01826	805	SMART	B3_2	164	266	IPR003340	GO:0003677
	Arst8g01826	805	Gene3D	-	672	766	-	-
	Arst8g01826	805	FunFam	Auxin response factor	162	266	-	-
	Arst8g01826	805	SUPERFAMILY	DNA-binding pseudobarrel domain	156	275	IPR015300	-
	Arst8g01826	805	Gene3D	-	328	400	-	-
	Arst8g01826	805	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	51	766	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
	Arst8g01826	805	FunFam	Auxin response factor	672	766	-	-
	Arst8g01826	805	CDD	B3_DNA	162	264	IPR003340	GO:0003677
	Arst8g01826	805	ProSiteProfiles	PB1 domain profile.	677	761	IPR000270	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst8g01826	Arst-Chr8	26662469	26667033	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst8g01826	48	805	B3 DNA Binding Superfamily	AT5G60450	60.598	0.0	847

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Arst8g01826		B3	1.9e-21	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst8g01826	-		-	ahf:112706773	1604.34

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