Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01742 ATGGCTCAAAGAATAGGGACGAAGTTGTTCGTGAGCAGATTATCGTTTTACACAACCAAAGACCAGTTGAAGAACTTGTTTTCTCCTTTCGGACAAGTTACCGAAGTGAATCTGGTGATGGATTCCAAAACTGGAAGGACCAAAGGATTTGGTTTTGTTTCCTACCAATCTGAAAACGAAGCACTCAAGGCTATCAAAGCCATGAATGGCCGGATAATTGCAGGAAGGCTTATTTTCGTTGAACCTGCTAAAGACACTAGATGA 264 0.4167 MAQRIGTKLFVSRLSFYTTKDQLKNLFSPFGQVTEVNLVMDSKTGRTKGFGFVSYQSENEALKAIKAMNGRIIAGRLIFVEPAKDTR 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01742 87 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Arst8g01742 87 SMART rrm1_1 8 81 IPR000504 GO:0003723
Arst8g01742 87 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Arst8g01742 87 Gene3D - 2 87 IPR012677 -
Arst8g01742 87 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 87 - -
Arst8g01742 87 SUPERFAMILY RNA-binding domain, RBD 6 85 IPR035979 GO:0003676
Arst8g01742 87 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01742 Arst-Chr8 25817609 25818634 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01742 6 80 Eukaryotic Initiation Factors Gene Family AT1G71770 38.667 7.27e-14 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01742 - K13195 pcin:129306862 124.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g01742 8 25817609 25818634 Arst8g01742 8 25817609 25818634 ECH