Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01557 ATGGATTCCGAGGACGATATGCACGATGCCAACGATGTGGAGTCACTCGACGAAGATTTCTACAGTGGCGAGACCGAAGAAGCTCCCATGGATTACAATGACTACGATGACGATGCCGATGACTACTTCGACGATGCTGATGATTCTGATAGGATTGAGTCTCGCCGCCCTGAGCAAAATTTTACCATATTGAAGGAATCGGATATTCAGCAAAGGCAGGAAGATGACATCACTAGAGTGGCAACCGTTCTTTCAATATCACGAGTTGCTGCAAGTATCCTGCTTCGTCATTACAATTGGAGTGTTAGTAAAGTGCACGATGCCTGGTTTGCTGACGAAGATCGAGTCCGTAAAACAGTTGGTTTGTTGGAGAAGCCAGTTGTCCAGCATCCTAATCCTAGAGAGATAACTTGTGGCATCTGTTTTGAAACGTATCCTCGTACCAAGATTCAAACTGCTACTTGTGGCCATCCTTATTGTTTTTCTTGCTGGGCAGGATATATTAGCACATCTATTAATGATGGTCCTGGATGTTTGATGCTGAGATGTCCCGATCCCACTTGTGGCGCTGCTGTTGATCAAGACATGATTAATCTCTTAGCACCTGATGAAGATAAAGAAAAGTATGCCCGTTACCTTCTTAGGTCATATATTGAAGACAATAAGAAGACCAAGTGGTGTCCTGCTCCAGGCTGTGAATATGCTGTCAATTTTGACGCTGGCAGTGGAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCACAGAGGAGGCTCATCGTCCAGTTGATTGTGGCACTGTGTCAAAGTGGATTCTGAAAAATAGTGCAGAATCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCGAAGTGCAAGCGACCAATTGAAAAAAATCAAGGGTGCATGCACATGACGTGTACTCCGCCTTGTAAATTTGAATTTTGCTGGCTATGCCTCGGTGCATGGTCAGATCATGGTGAAAGGACTGGGGGTTTTTATGCTTGCAATCGATATGAGGCAGCAAAACAAGAGGGAGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCATTGGAGAGGTACACGCATTATTATGAGCGATGGGCCAGCAATCAATCCTCGAGGCAAAAAGCTCTTGCAGATCTACACCAGATGCAAACTGTTCATATTGAAAAGCTTAGTGACACACAATGCCAGCCGGAGTCACAGCTTAAGTTCATAACTGAGGCCTGGCTACAGATAGTTGAATGCCGACGGGTGCTGAAGTGGACGTATGCATATGGATATTACTTGCCTGAGCATGAACATGCTAAAAAACAGTTTTTTGAGTACTTGCAAGGTGAGGCAGAATCTGGTTTGGAGCGACTTCATCAATGTGCTGAAAAGGAACTACAGTTGTTCCTTAATACTGATGGCCCATCTAAAGAATTCAATGACTTCCGCACAAAACTAGCTGGATTAACCAGTGTAACTAGAAACTACTTTGAGAATTTGGTTAGGGCTTTAGAGAATGGTTTATCTGATGTGGATAGTAATGGAGCTGCTTCAAGCAAAGCGACAAACTCTAAAAATGCCGCAGGGAGCAGCAAGGGGAGAGGTGGAAGAGGAAAGGGAACTCTTCGGGCGAGCATGGCTAGTAGTAGAATGACAGACGATAATCATTGGTCCTGTGAGCAATGTACCTATGCAAATGCGAAATCTGCCACCACGTGCCAGATCTGCAACCAACAGCGCCGGTGA 1773 0.4428 MDSEDDMHDANDVESLDEDFYSGETEEAPMDYNDYDDDADDYFDDADDSDRIESRRPEQNFTILKESDIQQRQEDDITRVATVLSISRVAASILLRHYNWSVSKVHDAWFADEDRVRKTVGLLEKPVVQHPNPREITCGICFETYPRTKIQTATCGHPYCFSCWAGYISTSINDGPGCLMLRCPDPTCGAAVDQDMINLLAPDEDKEKYARYLLRSYIEDNKKTKWCPAPGCEYAVNFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLNTDGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAASSKATNSKNAAGSSKGRGGRGKGTLRASMASSRMTDDNHWSCEQCTYANAKSATTCQICNQQRR 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01557 590 CDD BRcat_RBR_ANKIB1 214 278 - -
Arst8g01557 590 Pfam IBR domain, a half RING-finger domain 207 269 IPR002867 GO:0008270
Arst8g01557 590 Pfam IBR domain, a half RING-finger domain 286 334 IPR002867 GO:0008270
Arst8g01557 590 MobiDBLite consensus disorder prediction 1 59 - -
Arst8g01557 590 SUPERFAMILY RING/U-box 288 336 - -
Arst8g01557 590 CDD Rcat_RBR_ARI7-like 292 346 - -
Arst8g01557 590 SMART ibrneu5 207 269 IPR002867 GO:0008270
Arst8g01557 590 SMART ibrneu5 282 343 IPR002867 GO:0008270
Arst8g01557 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 219 IPR013083 -
Arst8g01557 590 SMART zf_4 564 588 IPR001876 -
Arst8g01557 590 ProSiteProfiles Zinc finger RING-type profile. 138 182 IPR001841 -
Arst8g01557 590 MobiDBLite consensus disorder prediction 521 559 - -
Arst8g01557 590 ProSiteProfiles Zinc finger RanBP2 type profile. 562 590 IPR001876 -
Arst8g01557 590 MobiDBLite consensus disorder prediction 521 539 - -
Arst8g01557 590 FunFam RBR-type E3 ubiquitin transferase 132 221 - -
Arst8g01557 590 ProSitePatterns Zinc finger RanBP2-type signature. 566 585 IPR001876 -
Arst8g01557 590 Pfam Ariadne domain 356 518 IPR045840 -
Arst8g01557 590 SUPERFAMILY Ran binding protein zinc finger-like 562 589 IPR036443 -
Arst8g01557 590 SUPERFAMILY RING/U-box 207 276 - -
Arst8g01557 590 CDD RING-HC_ARI6-like 135 196 - -
Arst8g01557 590 Gene3D - 265 520 - -
Arst8g01557 590 MobiDBLite consensus disorder prediction 1 47 - -
Arst8g01557 590 FunFam RBR-type E3 ubiquitin transferase 270 520 - -
Arst8g01557 590 Gene3D - 560 590 - -
Arst8g01557 590 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 68 435 IPR031127 GO:0004842|GO:0016567
Arst8g01557 590 ProSiteProfiles TRIAD supradomain profile. 134 347 IPR044066 -
Arst8g01557 590 SUPERFAMILY RING/U-box 133 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01557 Arst-Chr8 24557610 24562299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01557 17 589 ARIADNE family AT1G65430 71.453 0.0 852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01557 K11968 - gmx:100810427 1103.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g01557 8 24557610 24562299 Arst8g01557 8 24557610 24562299 ECH
Arst8g01557 8 24557610 24562299 Arst3g00477 3 3352474 3358466 PCT