Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01427 ATGTCAAACTTCACTCCACCACCACCAACTCAAACTCATGGCCAAGTTAATAAGAAGAAGAGAAGCCTCCCTGGTAACCCAGACCCTGATGCTGAAGTGATAGCGTTGTCACCGAAGACTCTGATGGCGACAAACAGATTCTTATGCGAGATCTGTGGGAAAGGGTTTCAGAGGGATCAGAATCTGCAGCTGCACAGAAGAGGCCACAACTTGCCGTGGAAGCTGAAGCAGAGAACGAAGACGGAGGTGGTGAGGAAGAAGGTGTACGTGTACCTCACCGGAATCAAGAAGCACTTTTGCAGGAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCTAAGAAGTACGCCGTTCAATCCGACTGGAAAGCTCACTCCAAAACCTGCGGCACTCGCGAGTACCGATGCGACTGCGGCACCCTCTTCTCAAGGAGGGACAGTTTTATCACGCACAGAGCGTTTTGTGATGCGCTTGCAGAAGAAAGCGCGAGAGCTGTGACAGCTGTATCTCAGTCTCAATCTCATGAAATCCATGGATTCCCACTGAAGCAAGAGCAACAAAGTAGTTTCAGCACCATGCCACCGTGGCTTGATTTCTCGTCAGTTACTCCAAGGTTGGATCTGGATGAACAAGTCCCAAATAGAAACCCTAACCCTAGCGGTGTAATTGGACCCACAGCGCACATGTCAGCCACTGCGTTGCTTCAGAAAGCAGCGCAGATGGGTGCAACCACCACCACCACCACCGTCAGCTCATCCGCACAACACTCACAGTCACAGCTCATCAGGACCCACCCGCAGGGTCACGTGTCTGACACTTTTGGTTTGAATTTGTCCTCACGTGACGACCCTACTGCTTTCGCTCACCATGGCTTCTTCCCGCCTCCTGCTTCTTCTCCGTCTCTCCTCCACCACGTCATCAACTCTTTTGACGACGCTTTTGGCGCCAACGACGGTGGTGGCGAGGGATTGACCAGGGATTTCTTGGGGCTTAGGCCTCTCTCTCATAGCGATATCCTCACCATTGCTGGTATCAGTAACTGCATCAACTCTACTTCTTCTTCTTCCCCGCATCATCATCACCAAAAGCCATGGCAAGATTAA 1107 0.5149 MSNFTPPPPTQTHGQVNKKKRSLPGNPDPDAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTKTEVVRKKVYVCXLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAVTAVSQSQSHEIHGFPLKQEQQSSFSTMPPWLDFSSVTPRLDLDEQVPNRNPNPSGVIGPTAHMSATALLQKAAQMGATTTTTTVSSSAQHSQSQLIRTHPQGHVSDTFGLNLSSRDDPTAFAHHGFFPPPASSPSLLHHVINSFDDAFGANDGGGEGLTRDFLGLRPLSHSDILTIAGISNCINSTSSSSPHHHHQKPWQD 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01427 369 SUPERFAMILY beta-beta-alpha zinc fingers 46 129 IPR036236 -
Arst8g01427 369 Gene3D Classic Zinc Finger 43 70 - -
Arst8g01427 369 FunFam protein indeterminate-domain 12-like 26 91 - -
Arst8g01427 369 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 10 351 IPR031140 -
Arst8g01427 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 69 IPR013087 -
Arst8g01427 369 Gene3D Classic Zinc Finger 82 157 - -
Arst8g01427 369 MobiDBLite consensus disorder prediction 1 32 - -
Arst8g01427 369 MobiDBLite consensus disorder prediction 1 19 - -
Arst8g01427 369 FunFam protein indeterminate-domain 5, chloroplastic-like 92 166 - -
Arst8g01427 369 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Arst8g01427 369 SMART c2h2final6 47 69 IPR013087 -
Arst8g01427 369 SMART c2h2final6 109 129 IPR013087 -
Arst8g01427 369 MobiDBLite consensus disorder prediction 207 228 - -
Arst8g01427 369 Pfam Zinc finger, C2H2 type 48 69 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01427 Arst-Chr8 23431223 23434196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01427 18 356 IDZ Gene Family AT1G55110 50.000 5.64e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst8g01427 zf-C2H2 0.012 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01427 K25870 - qsa:O6P43_027636 402.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g01427 8 23431223 23434196 Arst9g01682 9 31399419 31406174 PCT