Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01398 ATGAGGACGATCAAAGAGTTTTTCTTGAGGCACTACTACTCTCTTTGGCTGTCACCATCACTATCACCACCGTCACACATGAATTCTAACGACGTAGAAAATCACAGAAACAGCGACGTCACCACAAAACAAATAAAGATCAACAAAGAGGAGGGAAGAGGCGAGTCATCCTCGATTTCCTCGTTCTTATGCGAAATCTGCATTGATACTAAAACCGAAGTAGAAAATTTCTCTATAACCGGTTGCAGCCACTCATATTGTACGGATTGCGTGGTGAAGTACGTTGGTTCTAAGCTTGACGACAACGTGATTAATATCTGGTGTCCGACTCCTCGGTGTGGTGGTTTCTTGGAACTCGACGGTTGCCGCGAGGTTCTACCAAAGATAGTTTTCGATCGATGGGATAAGTTATTGTGTGAAGCTGCTGTTGTTGAGAATGAGAGCGAGAGATTCATGTATTGCCCCTTCAAGGACTGCTCTGCCCTTATGATCGTCGACGATGATTCACCAACGGAATCAGAATGCCCTAGCTGTAATAGGCAGATCTGCGTCATGTGCGAGGCAGTTTGGCATCATGGGAGCACGTGCGAAGAATTTGGGAGGACATATAATGAATATAGAGTAGTGATGGAGGTAGCGGCCAGGAACCAGTGGATGAGGTGCCCAAACTGCAGGTTCTTTATTGAGAAAAAACGTTTCACCTGCGATAAAATCCGTTGCAGATACAAAACTGCCATATAA 741 0.4507 MRTIKEFFLRHYYSLWLSPSLSPPSHMNSNDVENHRNSDVTTKQIKINKEEGRGESSSISSFLCEICIDTKTEVENFSITGCSHSYCTDCVVKYVGSKLDDNVINIWCPTPRCGGFLELDGCREVLPKIVFDRWDKLLCEAAVVENESERFMYCPFKDCSALMIVDDDSPTESECPSCNRQICVMCEAVWHHGSTCEEFGRTYNEYRVVMEVAARNQWMRCPNCRFFIEKKRFTCDKIRCRYKTAI 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01398 246 ProSiteProfiles TRIAD supradomain profile. 60 246 IPR044066 -
Arst8g01398 246 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 37 240 IPR031127 GO:0004842|GO:0016567
Arst8g01398 246 FunFam RBR-type E3 ubiquitin transferase 59 145 - -
Arst8g01398 246 Pfam IBR domain, a half RING-finger domain 133 196 IPR002867 GO:0008270
Arst8g01398 246 SUPERFAMILY RING/U-box 146 199 - -
Arst8g01398 246 SUPERFAMILY RING/U-box 61 141 - -
Arst8g01398 246 ProSiteProfiles Zinc finger RING-type profile. 64 112 IPR001841 -
Arst8g01398 246 SMART ibrneu5 132 196 IPR002867 GO:0008270
Arst8g01398 246 Pfam Zinc finger, C3HC4 type (RING finger) 64 101 IPR018957 GO:0046872
Arst8g01398 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 145 IPR013083 -
Arst8g01398 246 CDD BRcat_RBR_unk 147 199 - -
Arst8g01398 246 ProSitePatterns Zinc finger RING-type signature. 82 91 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01398 Arst-Chr8 23163736 23165004 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01398 64 242 C3H Transcription Factor Family AT2G19610 24.870 3.42e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01398 K11975 - gmx:100803898 207.994