Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01379 ATGGCCAACAAATATGATATGTTGCAGGCTGTTAGTGCTAAAAAATTGGATTGGTCATTTAATGTATGGGTGGCTAGACTCTGGGTTGTTCCTCAAAGAGAAGATCAAAATTCAATTTCCACTATAGAGATGGTCCTATGTGATTATGAGGGTAACAGGATACAAGCTTCAGTACCCAGGTCATTATCAAAAGATTTCATCTATGTCATTAAGGAGGGTGAAATGTATTGCATGAAGAATTTTATCGTCGGTTGTAATAACCTTTGGATTAAGAGTACACAACACTCACATAGATTAATATTTCTCCAAAGGACCACAGTTATGCATGTCTTTGAACCGACCTTCCCTTTTAAGCAATTTGATTTTACATCAATTGGCCAAATTTGTGAAGCCGACATAATTCATGAAAATCAACTCATTGATGTTATTGCTGAGGTAATTGGCAAAGAAACCCCAAGAGAATTAATGACAAAAAATGGAAAGGATAGCAAGCGCTTGGTCCTACTGTTGGAAGACATAGATAAAAATACTATCAGTTGCACTTTATTTGGTGAATTAGTTGACCGTATTTCTCCTTTTCTTGAACGAGAATCTTCTGAACCTCTAATTGTAGTTTTCCAATTGTTTCGACCTCGCATTTACAAAGGCAACCGGAGTATTCAAAGTTCATTTTATGCATCTAACATACATATCAATCCTCCAATATTGGAGGTTAATGAGTTCAAAAAGAAATTACTTGCTTTTGGGTCATCTGAATCGCAAAGAATCAGTCACATATCCTCTCGAGTTTACCACTCGCCAATTGAAGAGCTTAGCAAAAGATTGGTCCCTGTAAAGAGAATCGAGGATGTCCTGAATTCTACAGATGGAGGTGTATTATGGATTCTTGGTTCAATTGTTGCATTGGATGTTGGCAAGGATGATTGGTTTTACGCTGCTTGCATAGTGTGCCAGAAAAAAGCTAAACCAATAGGAGATCACTTTAGTTGTGATTTTTGTGTGAAGGAAGGAGTACCTGTATCTTTGAGATATAGGCTAAAAGCATATGTTACCGATGGCAGTGGTAGCCTATGCGTTGTTATTTGGGAGAATGAGGCCAAATCAATAGTTGGAATGGAAGCCAAAACTGTTAGAGCTAAATGCCAGGAAGATAACTCCAATAACTATCCCAGCGACCTTGATGTAATATTGGACAAGAAGATGTTGTTCAAGATCAATATTAAAGCTAACAATATCACTGGAACTGATGTGGTTTATAATGTTACAAGGATCTGTGATGACCATGATACTATAAAAAAGTTTACTCATGAGCTTGATGAAGATTCTGGATCTGAGTCAGTGAATGAAACCATTACCATCAATAGCCTTAGGTCATCAAATAAGAGACTTTCAAGTGAGATTATACAACAAGTTGCTGTTGATCTTGACAAAGACAGATACCCGCAAGCATCGGCTACAAAAGTGTTAAAGAGGAAGGATAAGAAAATTAAGGACTAA 1497 0.3701 MANKYDMLQAVSAKKLDWSFNVWVARLWVVPQREDQNSISTIEMVLCDYEGNRIQASVPRSLSKDFIYVIKEGEMYCMKNFIVGCNNLWIKSTQHSHRLIFLQRTTVMHVFEPTFPFKQFDFTSIGQICEADIIHENQLIDVIAEVIGKETPRELMTKNGKDSKRLVLLLEDIDKNTISCTLFGELVDRISPFLERESSEPLIVVFQLFRPRIYKGNRSIQSSFYASNIHINPPILEVNEFKKKLLAFGSSESQRISHISSRVYHSPIEELSKRLVPVKRIEDVLNSTDGGVLWILGSIVALDVGKDDWFYAACIVCQKKAKPIGDHFSCDFCVKEGVPVSLRYRLKAYVTDGSGSLCVVIWENEAKSIVGMEAKTVRAKCQEDNSNNYPSDLDVILDKKMLFKINIKANNITGTDVVYNVTRICDDHDTIKKFTHELDEDSGSESVNETITINSLRSSNKRLSSEIIQQVAVDLDKDRYPQASATKVLKRKDKKIKD 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01379 498 Pfam Domain of unknown function DUF223 43 132 IPR003871 -
Arst8g01379 498 Gene3D - 114 254 IPR012340 -
Arst8g01379 498 SUPERFAMILY Nucleic acid-binding proteins 278 426 IPR012340 -
Arst8g01379 498 CDD RPA1_DBD_B_like 141 243 - -
Arst8g01379 498 SUPERFAMILY Nucleic acid-binding proteins 119 243 IPR012340 -
Arst8g01379 498 Gene3D - 269 440 IPR012340 -
Arst8g01379 498 PANTHER OS03G0429900 PROTEIN 8 466 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Arst8g01379 498 SUPERFAMILY Nucleic acid-binding proteins 14 113 IPR012340 -
Arst8g01379 498 CDD RPA1_DBD_A_like 24 107 - -
Arst8g01379 498 CDD RPA1_DBD_C 295 436 IPR047192 -
Arst8g01379 498 Gene3D - 7 112 IPR012340 -
Arst8g01379 498 Pfam Replication factor-A C terminal domain 304 416 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01379 Arst-Chr8 21577216 21579767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01379 46 379 Core DNA Replication Machinery Family AT2G06510 23.563 1.27e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01379 - - adu:107461288 965.681