Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01367 ATGGAGGATGGCCCCGAGCGGCTAGTTGAGAACTCTCATGAAAATTCAGAAATGGAGGTTGTTGACGATGACGATGCCGCTTTGCAGCGCCAGCACCATTCAGAAAAGGATCAGAATGTGGATTCCAACTCCCCTGCTCAGCTCCAACAGGATCATGTCATGTTCGATCGGCAAAGTGATGACAACAAGAATGCCAATTCTGCTCTTCTTTCTGTGCTAGAGACCAAGACGGATAGTAGTAACACGCGCCATGAGAATCGCTTTCAAGATCTTAAAGTCCATTCGCACCATGAATTGCTCACTCCGAAGCCTAAAGAGAGGAATGTTAGGGAAATGAAAAACGTGCTCCATGATACTGAGATGACTGATTATGATGAGTCTGGTTCGTACTCCGAACGAGAAGCATTTATGAGAGAGCTGGAGAGTTTCTATAGAGAGAGATCCTTGGAGTTCAAGCCTCCTAAGTTTTATGGAGAGCCACTAAATTGCCTCAAGTTATGGAGAGCTGTCATCAAACTTGGTGGCTACGATGTGGTAACTGGATCCAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCCATCCACCCAAGACTTGCACTACAGTCTCATGGACGTTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTATGAAAAGTATAAGAGAGAAATTGGGGAGCTACAGCTCCCTGTTGGATCATTTCATCAATCTTCAAGTGTGGAAAAAGAGGCTCCAGGCTCTGGCTCTGGCAGGGCACGAAGGGATGCGGCAGCACGTGCAATGCAAGGTTGGCATGCCCAGCGCCTTCTTGGATATGGTGAGGTTGCTGAGCCAGTTATTAAGGATAAGAACTCCAATTCTACTCCGAAACGAGAAAAGAACCTCAAAAGTATTGGTATGCTAAATAAACACAGGACACCATCTGTTCTTGAGCATGCTGGGAAAGCTGCAAATATTGAAGGAGATAGACAATTGGTCACGGCAGTTGTAGATGTTGGACCCCCAGCAGACTGGGTGAAGGTCAATGTGCGAGAAACTAAGGATTGTTTTGAGGTTTATGCACTAGTTCCTGGACTCCTTCGCGAGGAGGTGCGAGTCCAATCTGATCCAGTTGGTCGTCTAGTTATAACTGGTCTCCCAGAACATGTTGACAATCCATGGGGAATTACCCCTTTCAAGAAGGTTGTGAACTTACCTGCAAGAATTGATCCGCTTCAGACATCTGCTGTAGTTAGTTTGCATGGCCGACTGTTTGTACGTGTTCCCTTTGAGCAGGGAGCTGTGTAA 1284 0.4626 MEDGPERLVENSHENSEMEVVDDDDAALQRQHHSEKDQNVDSNSPAQLQQDHVMFDRQSDDNKNANSALLSVLETKTDSSNTRHENRFQDLKVHSHHELLTPKPKERNVREMKNVLHDTEMTDYDESGSYSEREAFMRELESFYRERSLEFKPPKFYGEPLNCLKLWRAVIKLGGYDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKYKREIGELQLPVGSFHQSSSVEKEAPGSGSGRARRDAAARAMQGWHAQRLLGYGEVAEPVIKDKNSNSTPKREKNLKSIGMLNKHRTPSVLEHAGKAANIEGDRQLVTAVVDVGPPADWVKVNVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGLPEHVDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAV 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01367 427 SUPERFAMILY ARID-like 120 228 IPR036431 GO:0003677
Arst8g01367 427 SUPERFAMILY HSP20-like chaperones 335 422 IPR008978 -
Arst8g01367 427 Pfam ARID/BRIGHT DNA binding domain 132 217 IPR001606 GO:0003677
Arst8g01367 427 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 16 424 IPR045147 GO:0006357
Arst8g01367 427 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 326 427 IPR002068 -
Arst8g01367 427 ProSiteProfiles ARID domain profile. 130 221 IPR001606 GO:0003677
Arst8g01367 427 SMART ARID_2 127 217 - -
Arst8g01367 427 Gene3D - 130 228 IPR036431 GO:0003677
Arst8g01367 427 MobiDBLite consensus disorder prediction 23 39 - -
Arst8g01367 427 MobiDBLite consensus disorder prediction 1 16 - -
Arst8g01367 427 CDD ACD_sHsps_p23-like 342 421 - -
Arst8g01367 427 Gene3D - 328 426 IPR008978 -
Arst8g01367 427 SMART bright_3 131 222 IPR001606 GO:0003677
Arst8g01367 427 CDD ARID 132 217 - -
Arst8g01367 427 FunFam AT-rich interactive domain-containing protein 3 318 426 - -
Arst8g01367 427 FunFam AT-rich interactive domain-containing protein 3 130 229 - -
Arst8g01367 427 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01367 Arst-Chr8 20179291 20184295 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01367 101 424 ARID Transcription Factor Family AT1G76510 68.882 3.96e-154 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Arst8g01367 ARID 4.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01367 - - adu:107461292 847.04