Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Arst8g01331 | ATGGGGAGAGTGAAGGTTCCCATAAAAAAAATTGAGAACATAACAAACAGGCAAATTACATTTTTTAAGAGAAAGAATGGTCTCATTAAGAAAGCTTACGAGCTTTTTGTTCTTTGTGATGTTGATGTTGTTCTCATCACGTTCTCTCCTTCTGGCAGACCAGCTCTCTTCTCTTCCAACACAAGCTTTGATGAAATTCTAGAGCGATATATTAATCTTCCACCACAAGAACGCCAAAAGATCTATAACCAAGAGAACATGCAGAGGATGATTAATAAATTGAAAATTGAAGCAGAACAAATATGCCAAGTCCCTAGCCCGGTTAATTCAGATTTCCAGCTTGAGAAAATTCAAAAAGAATTATATATTTGCAAGTCTCAGTTAGAAGAAATGGAGAAACGACTAAGGATATTTGAAGGTGATCCACGTGAGATCACTACACTTTGTGAGGCTGAATATCGCCAGCATATTCTTCAGCAAACTCTAGAGCAAGTGCAGTTAAGAAAGGTGGATCTTGCAAACACGGTAGATGTAGATGAATTATTTGTTGGAGGGACATCAAATAATCCAGTAGAGTGGCTCCCACAGAAAGATGCAAACGTTGATATTCTGAACTTTGTTGATGCCTATGCTCCTGCTTCTCTTGTGGATCAACAATCACATAGTGCTGTTGTTGACATGTTAGGCACAAGTTCTACCCTTGTTCCTTATACAAACACCCTTCAACTTCAAATGAATCCAGAGAATAATAGTTCAGAAGTCTGCACACTATCTCCTGAGTTTGGACAAGTTATAGATATCGATGGTTCTTCTTGGGAGCAACTTTATGATTTAGGGAACCGATCTTTGTCAATAGCAGAGGCAAGGGAGGAAGAACAATATCTGAGTTTCCTTCTTCAGACATCTTAA | 909 | 0.3839 | MGRVKVPIKKIENITNRQITFFKRKNGLIKKAYELFVLCDVDVVLITFSPSGRPALFSSNTSFDEILERYINLPPQERQKIYNQENMQRMINKLKIEAEQICQVPSPVNSDFQLEKIQKELYICKSQLEEMEKRLRIFEGDPREITTLCEAEYRQHILQQTLEQVQLRKVDLANTVDVDELFVGGTSNNPVEWLPQKDANVDILNFVDAYAPASLVDQQSHSAVVDMLGTSSTLVPYTNTLQLQMNPENNSSEVCTLSPEFGQVIDIDGSSWEQLYDLGNRSLSIAEAREEEQYLSFLLQTS | 302 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Arst8g01331 | 302 | Gene3D | - | 14 | 97 | IPR036879 | GO:0003677|GO:0046983 | |
Arst8g01331 | 302 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Arst8g01331 | 302 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 3 | 162 | - | - | |
Arst8g01331 | 302 | SUPERFAMILY | SRF-like | 2 | 83 | IPR036879 | GO:0003677|GO:0046983 | |
Arst8g01331 | 302 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 54 | IPR002100 | GO:0003677|GO:0046983 | |
Arst8g01331 | 302 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Arst8g01331 | 302 | Coils | Coil | 114 | 134 | - | - | |
Arst8g01331 | 302 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Arst8g01331 | 302 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Arst8g01331 | 302 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Arst8g01331 | 302 | CDD | MADS_MEF2_like | 2 | 72 | IPR033896 | GO:0000977|GO:0045944 | |
Arst8g01331 | 302 | FunFam | Agamous-like MADS-box protein AGL66 isoform A | 14 | 79 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Arst8g01331 | Arst-Chr8 | 18034614 | 18037527 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Arst8g01331 | 1 | 211 | Type I MADS-box Gene Family | AT1G22130 | 41.202 | 1.37e-43 | 150 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-M-type | Arst8g01331 | SRF-TF | 2.1e-21 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Arst8g01331 | - | - | tpra:123918189 | 331.643 |