Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01330 ATGGGGAGAGTGAAGGTTCCCATAAAAAAGATTGAGAACATAACAAACAGGCAAATTATATTTTCTAAGAGAAAGAATGGTCTCATTAAGAAAGCTTACGAGCTTTCTGTTCTCTGTGATGTTGATGTTGTTCTCATCACGTTCTCTCCTTCTGGCAGACCAGCTCTCTTCTCTTCCAACACAAGCTTTGATGAAATTTTAGAGCGATATATTAATTTTCCACCACAAGAGCGCCAAAAGATCTATAACCAAGAGAACATGCAGAGGATGATTAATAAATTGAAAATTGAAGCAGAACAAATATGCCAAGTCCCTAGCCCGGTTAATTCAGATTTCCAGCTTGAGAAAATTCAAAAAGAATTATATATTTGCAAGTCTCAGTTAGAAGAAATGGAGAAACGACTAAGGATATTTGAAGGTGATCCATGTGAGATCACTACACTTTTTGAGGCTGAATATCGCCAGCATATTCTTCAGCAAACTCTAGAGCAAGTGCAGTTAAGAAAGGTGGATCTTGCAAACACGGTAGATGTAGATGGATTATTTTTTGGCGGGACATCAAATAATTCAATAGAGTGGCTCCCAGAGGAAGATCCAAATGTTGATATTCTCAACTTTGTAGATGCCTATACTCCTGCTCCTCTTTGGGATCAACAATCACATAGTGCTGTTGTTGACATGTTAAGCACAAGTTCTACCCTTGTGCCTTATACAAACACCCTTCAACTTCAAATGAATCCAGAGAATAATAGTTTAGAAGTCTGCACACTATCTCCTAAGTTTGGACAAGTTATAGATATCAATGGTTCCTCTTGGGAGCAACTCTATGATTTAGGGAATGGATCTTTGTCAATAGCAGAGGCAAGGGAGCAAGAACAACTAATTGAACAATATCTGTCTCAGTTTTCTTCTTTAGACATCTTAATATCCGATCAACATCATCAAATATGA 951 0.3754 MGRVKVPIKKIENITNRQIIFSKRKNGLIKKAYELSVLCDVDVVLITFSPSGRPALFSSNTSFDEILERYINFPPQERQKIYNQENMQRMINKLKIEAEQICQVPSPVNSDFQLEKIQKELYICKSQLEEMEKRLRIFEGDPCEITTLFEAEYRQHILQQTLEQVQLRKVDLANTVDVDGLFFGGTSNNSIEWLPEEDPNVDILNFVDAYTPAPLWDQQSHSAVVDMLSTSSTLVPYTNTLQLQMNPENNSLEVCTLSPKFGQVIDINGSSWEQLYDLGNGSLSIAEAREQEQLIEQYLSQFSSLDILISDQHHQI 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01330 316 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst8g01330 316 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 79 - -
Arst8g01330 316 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 162 - -
Arst8g01330 316 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Arst8g01330 316 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Arst8g01330 316 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Arst8g01330 316 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst8g01330 316 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst8g01330 316 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst8g01330 316 Coils Coil 114 134 - -
Arst8g01330 316 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Arst8g01330 316 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01330 Arst-Chr8 18027572 18030454 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01330 1 231 Type I MADS-box Gene Family AT1G22130 39.300 1.46e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Arst8g01330 SRF-TF 4.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01330 - - tpra:123918189 348.591