Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01313 ATGGCACTAGAAGCTCTGAAATCCCCTACCGCTGCAGGATCTTCCTTCAGCTTTGAGGAAACCAATAATCTCAGCTACTTGGAAGCACCCTGGGCTAAGAGAAAGCGTTCGAAGCGTGCCAACAGAATGGAACTGCCCCATAACTGCTCCGAGGAAGAGTACCTCGCTCTCTGCCTCATCATGCTTGCTCGCGGCACGACTACCGTCCCCACAGTCACAGCCACCGCCACTGCTGTCCAATCCAAGCCTCACTGCTCTCCTGCTCCATCTGTTGATGAGTCGGCTCCAATTCCAACCGCCAATCTCACCTACAAGTGCTCTGTCTGCAACAAAGCTTTCTCATCTTATCAGGCACTCGGTGGACACAAGGCCAGCCACCGCAAGTTCGCTACTGCCGCCGTTGGCGGCGAAGACCGTCACTCGACCTCCTCCGCCGTCACCAACAGTTCCGTTTCCAAAGCATCCAACGGTGGAGGCAAGGCTCACGAGTGTTCCATCTGCCATAAGTCTTTCCCAACAGGACAGGCTTTGGGAGGACACAAGCGTTGCCACTACGATGGCGGCGCCGCTGCATCTGCATCCGCCGCTGCTGGCAGTGCCGTTACTACTTCAGAAGGGGTTGGGTCTACTCACACCGTTAGTCATCGCGACTTCGATCTGAACTTGCCTGCTTTTCCAGATTTGTCCAACAAGTTCTTCGTGGAGGACGAGGTTTCCAGCCCTCTGCCGATGAAGAAGCCCCGTCTCTTGACCCTACCGAAGATTGAAATCCCTCGATTCCATTAA 786 0.5496 MALEALKSPTAAGSSFSFEETNNLSYLEAPWAKRKRSKRANRMELPHNCSEEEYLALCLIMLARGTTTVPTVTATATAVQSKPHCSPAPSVDESAPIPTANLTYKCSVCNKAFSSYQALGGHKASHRKFATAAVGGEDRHSTSSAVTNSSVSKASNGGGKAHECSICHKSFPTGQALGGHKRCHYDGGAAASASAAAGSAVTTSEGVGSTHTVSHRDFDLNLPAFPDLSNKFFVEDEVSSPLPMKKPRLLTLPKIEIPRFH 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01313 261 Gene3D Classic Zinc Finger 102 184 - -
Arst8g01313 261 SMART c2h2final6 162 184 IPR013087 -
Arst8g01313 261 SMART c2h2final6 104 126 IPR013087 -
Arst8g01313 261 MobiDBLite consensus disorder prediction 137 154 - -
Arst8g01313 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 184 IPR013087 -
Arst8g01313 261 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 35 223 IPR044653 GO:0003700
Arst8g01313 261 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Arst8g01313 261 MobiDBLite consensus disorder prediction 135 154 - -
Arst8g01313 261 SUPERFAMILY beta-beta-alpha zinc fingers 103 184 IPR036236 -
Arst8g01313 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 126 IPR013087 -
Arst8g01313 261 ProSitePatterns Zinc finger C2H2 type domain signature. 164 184 IPR013087 -
Arst8g01313 261 Pfam C2H2-type zinc finger 104 128 - -
Arst8g01313 261 Pfam C2H2-type zinc finger 161 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01313 Arst-Chr8 17819056 17820146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01313 1 257 C2H2 Transcription Factor Family AT1G27730 47.893 3.92e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst8g01313 zf-C2H2_6 5.5e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01313 - - gmx:100800095 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g01313 8 17819056 17820146 Arst8g01313 8 17819056 17820146 ECH