Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01276 ATGCAAGAAACAATGCCTACTCCTCCTCCTCTGAAGGTGTTGATTGAAGAGATGGAGTCATCAATGGAAGATGTTCCTTCGGTTTTCATCTGTCCCATCTCGCTGGAGCCAATGAGAGACCCAGTCACACTCTGCACCGGCCAAACCTACGACAGGTCCAACATCCTCAAATGGTTGTCCCTCGGCCACAACACTTGTCCTACCACCATGCAACACCTTTGGGACCTCTCCCTCACCCCCAACACCACCCTCCACCGCTTCATCCTCACATGGTTCTCTCACAACTACTTCTCCATCAAGAAAAGCCTCCAAGACGTTCAACGCACAGCCTTTCACCTCTTGGAATCACTCAACAAGGTTAAGGGTCAAGCAAGAGTTAAATCCCTCAAGGAACTTCGCCACCTCCTTCATTCTCACGCTTCAATAAGGAAGACAGTTGTGGAACACAACGGACTTGCCTTGGTTTCTTCATTGTTAGGTCCTTTCACTTCCCATGCTGTTGGGTCAGAAGCCGTTGGGATACTCGTGAAGCTGGACTTGAGTTCAGAGGTTAAGAAGAATCTGATGCATCCATCAAAAGTGTCGTTATTGGTGGATATCATGAACGAGGGAACCGTTGAAACAAAGATGAACTGTGCAAAGTTGATTGAGATATTGTTGTTAGAAGGACACGTGTCAAGCTTGAGTCTGTTGGTGGGTTTGTTGAGGTTAGTTAGAGACAAGAAACACCCAACTGGGGTGGTCTTGAACGGCCTCATGCTGATCAAGATGATGTGCAGTTCCCAAGAATCAGTTAGAACTTCCATTGTGAGAATCGGAGCGGTGCCGCAGCTGGTGGATCTATTGCCAACACTAAACGATGAGTGCTTGGAAATAGCGCTGTTTATTCTGGAGGTGGTGTCGACGATTCCAGAAGGAAGAATGGCGTTGAGAGATTGTCCCAATGTTGTGATTAATTTGGTGAAGTTGTTGATGAGAGTCTCTGAGAGGTGCAAGCTATTTGCGCTTTCGATATTGTGGGCTATTTACAAGCTTGCGCCGGAACAATGTGCCTCCGAGGCGGTGGAGGCTGGGTTGGCGGCGAAGCTGCTTCTGGTGATTCAAAGCGGTTGCAACCCTGTTTTAAAGCACATGTCTGCTGAGTTCTTGAAATTGTGCAGTTTGAATTACTCTGCTAGTATCTTCATCTCTAAGTGTATGCTTACCACAACAATACAATGA 1221 0.4717 MQETMPTPPPLKVLIEEMESSMEDVPSVFICPISLEPMRDPVTLCTGQTYDRSNILKWLSLGHNTCPTTMQHLWDLSLTPNTTLHRFILTWFSHNYFSIKKSLQDVQRTAFHLLESLNKVKGQARVKSLKELRHLLHSHASIRKTVVEHNGLALVSSLLGPFTSHAVGSEAVGILVKLDLSSEVKKNLMHPSKVSLLVDIMNEGTVETKMNCAKLIEILLLEGHVSSLSLLVGLLRLVRDKKHPTGVVLNGLMLIKMMCSSQESVRTSIVRIGAVPQLVDLLPTLNDECLEIALFILEVVSTIPEGRMALRDCPNVVINLVKLLMRVSERCKLFALSILWAIYKLAPEQCASEAVEAGLAAKLLLVIQSGCNPVLKHMSAEFLKLCSLNYSASIFISKCMLTTTIQ 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01276 406 Gene3D - 109 226 IPR011989 -
Arst8g01276 406 Pfam U-box domain 25 95 IPR003613 GO:0004842|GO:0016567
Arst8g01276 406 CDD RING-Ubox_PUB 26 78 IPR045210 -
Arst8g01276 406 Gene3D - 227 399 IPR011989 -
Arst8g01276 406 PANTHER WDSAM1 PROTEIN 18 392 IPR045185 GO:0061630
Arst8g01276 406 SUPERFAMILY ARM repeat 69 262 IPR016024 -
Arst8g01276 406 SMART Ubox_2 28 91 IPR003613 GO:0004842|GO:0016567
Arst8g01276 406 SUPERFAMILY ARM repeat 230 390 IPR016024 -
Arst8g01276 406 ProSiteProfiles U-box domain profile. 24 98 IPR003613 GO:0004842|GO:0016567
Arst8g01276 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 108 IPR013083 -
Arst8g01276 406 SUPERFAMILY RING/U-box 13 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01276 Arst-Chr8 17431069 17432414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01276 11 406 U-box Gene Family AT3G49810 60.100 1.50e-165 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01276 - - aip:107608514 752.281