Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01259 ATGAATTTGAAGATGGATTCTGATAAAGCGAAGCTCTTTGTTGGGGGTATCTCGCGTGACACCACCGAGCACGTACTCAGAGATCACTTCGCCAGATACGGCGTCGTTTTGGATTGCACCATCTCCTTGGACCGCACTACCCGAATCCCTAGAGGTTTCGGCTTCGTTACTTTTTCCGATCTCGCTGCTGCTGATAAAGCTCTTCAGGACACCCATGTCATACTCGGAAGAACGGTAGAAGTGAAAAAAGCAATACCAAGAAGTGAGCAGCAACACCAACACCAAAATCAAGTACAGAACAGGGGAGCGAGTAACTATAGTTGTAATGACTGTAGCAGTGACAACATTAGGACTAAAAAGATTTTTGTAGGGGGTTTGTCTGCTGGTATCTCAGAGGAGGAGTTCAGGAAATACTTTGAGCGGTTTGGTCGCATAACTGATGTAGTGGTGATGCAGGACAGCGTAACTCACCGGCCTAGGGGATTCGGTTTCATCACTTTTGATTCTGAAGAGTCGGTACAAAATGTTATGGTGAAAAGTTTCCATGATTTGAATGGTAGACAGGTGGAGGTCAAGAGAGCTGTTCCAAAAGAGGGAAACTATGGTTATGATGGTTTTAATAAGCTAAGATACAGGAGTGAAAGAGGAGCCTCTAAAAGTTTTCCTCCTTATAGTCCTAGCTGCGCAGTTCCTGGCTTTGCGCCTCAGCCATGGTATAGTAATGATGGTGTTTATGTCTATGGATCAAGCAATTATGGTTGGTACCCTATGGGTGGGTATGGAAGTAACGGATATGCAGTGCCATCTGATATTTCTAGGAACTTCTGGTATGGGCCCATGATAGCCAGTCCTCAGGGATGTCATGTGCCTTATGCTAATGCTTTGCCGAATATTGCGTATATGGGTGGTAGGCTAGGAGTAGTAGGTAATGTAGTTGGAACTAGAGGGTACAATGGCATTCTTGGTGCTGCAAGAAATATAAAATCTGATCAACCTCTAACTGCCAATGGATTCATTCCAGGCAATGTGACATTACATCAAGTTGTGACTCAAGATGTGGTCTCTTCTAATTTGAAAGGATCAAATGGTGAAATTTCTAGTTGA 1104 0.4402 MNLKMDSDKAKLFVGGISRDTTEHVLRDHFARYGVVLDCTISLDRTTRIPRGFGFVTFSDLAAADKALQDTHVILGRTVEVKKAIPRSEQQHQHQNQVQNRGASNYSCNDCSSDNIRTKKIFVGGLSAGISEEEFRKYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQNVMVKSFHDLNGRQVEVKRAVPKEGNYGYDGFNKLRYRSERGASKSFPPYSPSCAVPGFAPQPWYSNDGVYVYGSSNYGWYPMGGYGSNGYAVPSDISRNFWYGPMIASPQGCHVPYANALPNIAYMGGRLGVVGNVVGTRGYNGILGAARNIKSDQPLTANGFIPGNVTLHQVVTQDVVSSNLKGSNGEISS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01259 367 SUPERFAMILY RNA-binding domain, RBD 6 106 IPR035979 GO:0003676
Arst8g01259 367 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 297 - -
Arst8g01259 367 Gene3D - 2 113 IPR012677 -
Arst8g01259 367 FunFam RNA-binding protein 1 115 205 - -
Arst8g01259 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 196 IPR000504 GO:0003723
Arst8g01259 367 SMART rrm1_1 120 192 IPR000504 GO:0003723
Arst8g01259 367 SMART rrm1_1 11 82 IPR000504 GO:0003723
Arst8g01259 367 SUPERFAMILY RNA-binding domain, RBD 91 206 IPR035979 GO:0003676
Arst8g01259 367 Gene3D - 116 198 IPR012677 -
Arst8g01259 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 187 IPR000504 GO:0003723
Arst8g01259 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Arst8g01259 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Arst8g01259 367 CDD RRM2_Hrp1p 120 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01259 Arst-Chr8 17165505 17167523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01259 12 283 Eukaryotic Initiation Factors Gene Family AT2G36660 24.910 1.02e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01259 K14411 - gmx:100816822 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g01259 8 17165505 17167523 Arst8g01259 8 17165505 17167523 ECH