Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01250 ATGGGTAGGGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGGCCATGGTCCCCAGAAGAAGATTCCAAACTCAAATCCTACATCGAACAACACGGCACTGGTGGCAACTGGATTGCTTTGCCCCAAAAGATCGGGCTTAAGCGATGTGGCAAGAGTTGCCGTCTGCGGTGGCTCAACTACCTTCGCCCTAATCTCAAGCACGGTGGTTTCTCCGAAGAAGAAGACAACATCATTTGCAGCCTCTATGTTACTATTGGAAGCAGGTGGTCGGTGATTGCAGCGCAGTTGCCTGGAAGAACAGACAACGACATAAAGAACTATTGGAACACCAAGCTGAAGAAGAAGCTTCTGGGAAAACACCGCACTAATAACAAAGAGCACCACCAACAACCACGTTCTAGAAAGCAAGCATCAACAACCAATAATACTAGTGTTACCGGGGATTTTTCATCATCATCATCATCATCTGCTACTGCTACTTATTGGTCACACATGCATATGCCTATGCTGCCACTACCACCACCACCACCACCATTACCACCGTTGCCATACGCAGAAGATAATAATAATAGCAACAATGAAGAGCCCAGTTTCAACGACCAAGACTCTCTCAGGAAACTTCTTATCAAGCTCGGAGGAAGATTCTCCAACAACAATTTTAATGAGGATTATCAGCGGCCACCACTTGATGATGGGGTCATCATGAATTTTCATCAATTCCCTTCTTATGAAAATCATCATCATAATATTGGTTCATCATCTAGTTGCATGGTATCTGCTAATAATTATCCACAAAGGTTAGATGGATTGGAGTTCTTTTACGGAGAGGAAATGGCTGTAACTAATGATGAGAAGATAATAGAAACTGGTGGTGCTTCTAATAATAATAATGAGTGGTGTGAGAGCAGCAACACCACACTGATTTATCCTCCTCTTCATGAAGATTTCAGCTACCGAACCCCGCAATAG 972 0.4383 MGRAPCCDKANVKKGPWSPEEDSKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYVTIGSRWSVIAAQLPGRTDNDIKNYWNTKLKKKLLGKHRTNNKEHHQQPRSRKQASTTNNTSVTGDFSSSSSSSATATYWSHMHMPMLPLPPPPPPLPPLPYAEDNNNSNNEEPSFNDQDSLRKLLIKLGGRFSNNNFNEDYQRPPLDDGVIMNFHQFPSYENHHHNIGSSSSCMVSANNYPQRLDGLEFFYGEEMAVTNDEKIIETGGASNNNNEWCESSNTTLIYPPLHEDFSYRTPQ 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01250 323 FunFam Transcription factor RAX3 7 68 - -
Arst8g01250 323 PANTHER OS09G0431300 PROTEIN 1 263 - -
Arst8g01250 323 CDD SANT 71 111 IPR001005 -
Arst8g01250 323 MobiDBLite consensus disorder prediction 135 155 - -
Arst8g01250 323 Gene3D - 7 68 - -
Arst8g01250 323 SMART sant 67 115 IPR001005 -
Arst8g01250 323 SMART sant 13 64 IPR001005 -
Arst8g01250 323 FunFam Transcription factor MYB36 70 142 - -
Arst8g01250 323 CDD SANT 16 62 IPR001005 -
Arst8g01250 323 MobiDBLite consensus disorder prediction 173 202 - -
Arst8g01250 323 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Arst8g01250 323 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Arst8g01250 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Arst8g01250 323 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Arst8g01250 323 Gene3D - 70 146 - -
Arst8g01250 323 MobiDBLite consensus disorder prediction 116 155 - -
Arst8g01250 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Arst8g01250 323 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Arst8g01250 323 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01250 Arst-Chr8 16987015 16988934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01250 1 127 MYB Transcription Factor Family AT3G49690 88.189 5.74e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Arst8g01250 Myb_DNA-binding 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01250 K09422 - gmx:100790407 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g03948 6 107801041 107802814 Arst8g01250 8 16987015 16988934 PCT