Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Arst8g01238 | ATGCTCCAAAACCTTCGAATCCCTAACTCCGATGGAGGAGGAGGAGTACCACTCTCTCCATTCTCTATCGATGCCGAAGATCCTGACAGTCAACACCACCTCCACGTGTTCTCCACCGATCATTTTCGAATGTTCGACTTCAAGGTTCTGAACTGTCCACGTGGCAGGTCGCACGACTGGACGGAGTGCCCCTACGCTCACCCCGCGGAGAAGGCTCGCCGGAGAGACCCTCGAAAGTACCATTACTCCGGCACTGCGTGTCCGGAGTTTAGAAAAGGGCATTGCCGAAAAGGTGACTCGTGCGAGTTCGCTCACGGCGTGTTCGAGTGCTGGCTCCACCCTCAAAGATACAGGACACATCTCTGCAAGGACGGCGCGGCCTGCCGCCGCCGCGTCTGCTTCTTTGCACACGCGCCGGATCAGCTGCGCGTGCTGGCTCCCAACTCGGCCGAGTCGCAACTCAGCGACTCGCGGAGTCTTCGTCGCAATAAAAACAACAACGTTTCTTCGCCTACTTCAGTTCTTAATTACTCTTGCTATTTCCCGGAGTCGCCGCCATCTTCGCCTGGGGATCCTCGACACGGCGTCGTTCCGTTTAGTACGGTGCGGGAGTTGGTGAGCTCAATGCGGAACATGCAGCTTGAGGAAATGGGCTGTGGGCCTCAGATGGGCTGTGTGTATGGGTCTCCGCAATTGGGCCTGGGCCCAATGAGCGGGTGTGAGGAAGAGCCTGCAATGGAGAGAGTGGAATCTGGGAGAGACATTAGGGCGAGAATGTACGCGAAGCTGAGTAGGGAGAACTCGTCGATTGGGAGAAGCGAGGGTCCTTTCCCTGATATTGGATGGGTCTCTGAACTCCTAAAATGA | 867 | 0.564 | MLQNLRIPNSDGGGGVPLSPFSIDAEDPDSQHHLHVFSTDHFRMFDFKVLNCPRGRSHDWTECPYAHPAEKARRRDPRKYHYSGTACPEFRKGHCRKGDSCEFAHGVFECWLHPQRYRTHLCKDGAACRRRVCFFAHAPDQLRVLAPNSAESQLSDSRSLRRNKNNNVSSPTSVLNYSCYFPESPPSSPGDPRHGVVPFSTVRELVSSMRNMQLEEMGCGPQMGCVYGSPQLGLGPMSGCEEEPAMERVESGRDIRARMYAKLSRENSSIGRSEGPFPDIGWVSELLK | 288 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Arst8g01238 | 288 | ProSiteProfiles | Zinc finger C3H1-type profile. | 82 | 108 | IPR000571 | GO:0046872 | |
Arst8g01238 | 288 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 86 | 106 | IPR000571 | GO:0046872 | |
Arst8g01238 | 288 | FunFam | Zinc finger CCCH domain-containing protein 66 | 39 | 107 | - | - | |
Arst8g01238 | 288 | MobiDBLite | consensus disorder prediction | 149 | 169 | - | - | |
Arst8g01238 | 288 | PANTHER | UNKEMPT FAMILY MEMBER | 34 | 288 | IPR045234 | - | |
Arst8g01238 | 288 | Gene3D | - | 82 | 145 | - | - | |
Arst8g01238 | 288 | SMART | c3hfinal6 | 116 | 139 | IPR000571 | GO:0046872 | |
Arst8g01238 | 288 | SMART | c3hfinal6 | 81 | 107 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Arst8g01238 | Arst-Chr8 | 16822136 | 16823464 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Arst8g01238 | 21 | 149 | C2H2 Transcription Factor Family | AT5G12850 | 62.016 | 6.85e-55 | 187 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Arst8g01238 | zf-CCCH | 1.1e-05 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Arst8g01238 | - | K23048 | adu:107461217 | 617.846 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Arst8g01238 | 8 | 16822136 | 16823464 | Arst8g01238 | 8 | 16822136 | 16823464 | ECH |