Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01210 ATGACATCTGCATCAAGTGAGATAAGTGCCTCTACTTCGCTACCAATAAAGAAGAAGAGAAATCTCCCAGGCCACCCAGACCCTGATGCTGAAGTGATAGCCTTATCACCAAAGAGCCTGTTGGCAACAAACCGGTTCGTTTGTGATGTTTGCAACAAAGGGTTTCAAAGAGACCAGAATCTGCAGCTTCATAGAAGGGGCCACAATCTGCCATGGAAGCTAAAGCAAAGAAGTAACAAAGAGATAATAAGGAAGAAGGTGTACGTTTGTCCAGAGCCAACTTGCGTTCACCATGACCCCTCAAGGGCACTCGGCGACCTCACCGGAATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGACAGGTGCTCCAAGCGCTACGCCGTTCATTCAGATTGGAAAGCTCACTCCAAAATATGTGGCACCCGAGAGTACAAATGTGACTGCGGAACCATTTTTTCCAGGAGGGATAGTTTCATCGCTCACAGGGCATTCTGTGATGCTCTAGCACAAGAGAGTACGAAAGCAATCACAACCTTGTTGAACCCATCATCATCAGTGAAGAAGGAATTGCAAGAAGTTAATTTCAGATCAGAAAATGGTCCATCATGGTTGTCTTACTCAACGTCGGTAGGAGGAGAAGGAAGCCATGGAAGAGTAGTTCATAACAATAATAATAATAATAATCCAACATTATTATTCTCGTCGCCGCCGCCGTCCACGTCGCCGCTCTCTACAATGATCCACCATGAAAACCCTAACCCTAATATTACTATGTTGCCACCTAATAATAATGCTTTATTATTTGAAGGCATGGCTTCTTCTTATTCTTCTTCTTCTTCTCATAATCTCATGTCTGCTACTGCATTGTTACAAAAGGCATCAGAAATAGGTGCAACGGTGTCGCTGGGTAAACCCTATCTACACGCTCATCATCACCATCGGGGTCACGTGCCTGAAAGCACCACCACGGGGTATGGCACCTTGTCGTCAATGGCCACATCTTCATCATCTGTTTCTGGATTATTGGACATGGATTCACGTGAAGAGATAGGGACAGGGATGATGTTTGCTCGTCATCATCATGGCTTCTTGGCATCTTATGACAGTCACGCAAAAGAAGCTTCTCTTCTTGTTCATAATGATATGATGGATGGTACTAGTACCTTTGAGGAGGCTCTAATGAGAGGAATCATGAATCATCCTACGAGAGAAGATGCTGATAATAATAATAGTAATAACTTTGATGAACTTGTTTCAAGATCCGCGGGATCCCGCGGCGGTGGCGGTGGTGTCAACGATGAGACTAGAGATTTTTTGGGGATTGGGGTGTTTTCTCAGAGAGATATTTTCAATATATCTGGTCTTCATCATCATCATTTGGATTCTTCTTCGTATGGCAACCAAAATCAAAAGCAACCACCCTGGCAAGGGTAA 1452 0.4442 MTSASSEISASTSLPIKKKRNLPGHPDPDAEVIALSPKSLLATNRFVCDVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEIIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDRCSKRYAVHSDWKAHSKICGTREYKCDCGTIFSRRDSFIAHRAFCDALAQESTKAITTLLNPSSSVKKELQEVNFRSENGPSWLSYSTSVGGEGSHGRVVHNNNNNNNPTLLFSSPPPSTSPLSTMIHHENPNPNITMLPPNNNALLFEGMASSYSSSSSHNLMSATALLQKASEIGATVSLGKPYLHAHHHHRGHVPESTTTGYGTLSSMATSSSSVSGLLDMDSREEIGTGMMFARHHHGFLASYDSHAKEASLLVHNDMMDGTSTFEEALMRGIMNHPTREDADNNNSNNFDELVSRSAGSRGGGGGVNDETRDFLGIGVFSQRDIFNISGLHHHHLDSSSYGNQNQKQPPWQG 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01210 483 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Arst8g01210 483 MobiDBLite consensus disorder prediction 408 437 - -
Arst8g01210 483 SMART c2h2final6 123 143 IPR013087 -
Arst8g01210 483 SMART c2h2final6 46 68 IPR013087 -
Arst8g01210 483 SMART c2h2final6 88 118 IPR013087 -
Arst8g01210 483 SUPERFAMILY beta-beta-alpha zinc fingers 45 143 IPR036236 -
Arst8g01210 483 MobiDBLite consensus disorder prediction 1 29 - -
Arst8g01210 483 Gene3D Classic Zinc Finger 101 181 - -
Arst8g01210 483 MobiDBLite consensus disorder prediction 409 425 - -
Arst8g01210 483 MobiDBLite consensus disorder prediction 1 16 - -
Arst8g01210 483 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 11 463 IPR031140 -
Arst8g01210 483 FunFam protein indeterminate-domain 12-like 25 94 - -
Arst8g01210 483 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 68 IPR013087 -
Arst8g01210 483 FunFam protein indeterminate-domain 5, chloroplastic-like 101 180 - -
Arst8g01210 483 Gene3D Classic Zinc Finger 46 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01210 Arst-Chr8 16546723 16549284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01210 17 181 IDZ Gene Family AT3G50700 85.455 1.30e-109 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst8g01210 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01210 K25870 - qsu:112016383 417.542