Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01201 ATGGCGGGAAGAATGAGAGTGAAGGAGGAAGAGGAGACTGTGGTTTTGTGTGGGAGCGGACCAGGTGGTTCATCTTCTTCATCAAGCGTGTCACCGCAACCCATGGAAGGGTTGCACGATGTGGGACCACCACCGTTTCTGACGAAGACCTTCGAAGTGGTGGAGGATCCTTCCACCGACTCCATTGTTTCTTGGAGCAGAGCTCGCAACAGCTTCGTTGTGTGGGACTCGCACAGATTCTCCACCACGATCTTGCCTCGTTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACTTACGGGTTTAGGAAAGTGGATCCTGATCGATGGGAATTTGCGAACGAGGGGTTCTTGGCAGGGCAGAAGCACTTGTTGAGGACGATAAAGAGGAGGAGGAATGTGACGCAGTCGTCAACGAACACGATCCAGCATGGAGAAGGAGGAGGAGGAGGAAGTTGTGTTGAGTTAGGTGAGTTTGGTTTGGAAGGTGAGATAGAGAGGCTGAGAAGGGATAGGACGGTGTTAATGGCGGAGATCGTGAAGCTGAGGCAGCAACAGCACAACTCAAGGGAGCGGATTTGTTCAATGGAGTCAAGGTTGCAAGTCACAGAGAAGAAACAAACTCAGATGATGACTTTCCTGGCCAAAGCACTCCACAACCAGTCTTTCATTCATAACCTTTCTCTTCAGAACAGAGAATTACAGGGTTTTGAGATGAGCAGGAAGAGGAGAATAACTGCTACCGCAAGTGTGGAGAATCTGCAAGAGGATCCTGTTGCTGTTGAAGAGCAAGAGGAATTGACGAGTATTGGGTGTGAGATAGAGACACTTTTGTCAAGTGCTTGCGATAATGAATCAAGCAGTGAAATGAAGGAGCCTACTGCTGCTGCTGCTGCTGCTGCTACCAGTGAGAATATATGGGAAGATTTGCTTAGTGAGGATTTAGTTGGTGGGAATCCGGAGGATGAAGTTGTCATTGGTGATTACCCACACCAAAATCTTGAAGATTTGGCTGCAACAAACACTGGTGATTGGTCTGAAGACTTGCAGAAACTTGTGGATCATATGGGTTTTCTTGCCTCTAATCCATAA 1104 0.4819 MAGRMRVKEEEETVVLCGSGPGGSSSSSSVSPQPMEGLHDVGPPPFLTKTFEVVEDPSTDSIVSWSRARNSFVVWDSHRFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLAGQKHLLRTIKRRRNVTQSSTNTIQHGEGGGGGSCVELGEFGLEGEIERLRRDRTVLMAEIVKLRQQQHNSRERICSMESRLQVTEKKQTQMMTFLAKALHNQSFIHNLSLQNRELQGFEMSRKRRITATASVENLQEDPVAVEEQEELTSIGCEIETLLSSACDNESSSEMKEPTAAAAAAATSENIWEDLLSEDLVGGNPEDEVVIGDYPHQNLEDLAATNTGDWSEDLQKLVDHMGFLASNP 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01201 367 Gene3D - 39 136 IPR036388 -
Arst8g01201 367 ProSitePatterns HSF-type DNA-binding domain signature. 85 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst8g01201 367 SUPERFAMILY "Winged helix" DNA-binding domain 42 135 IPR036390 -
Arst8g01201 367 PRINTS Heat shock factor (HSF) domain signature 46 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst8g01201 367 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst8g01201 367 PRINTS Heat shock factor (HSF) domain signature 97 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst8g01201 367 FunFam Heat shock transcription factor 1 39 136 - -
Arst8g01201 367 SMART hsfneu3 42 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst8g01201 367 MobiDBLite consensus disorder prediction 1 38 - -
Arst8g01201 367 MobiDBLite consensus disorder prediction 19 34 - -
Arst8g01201 367 Pfam HSF-type DNA-binding 46 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst8g01201 367 Coils Coil 169 189 - -
Arst8g01201 367 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 32 267 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01201 Arst-Chr8 16476184 16478174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01201 32 367 HSF AT2G26150 52.059 1.60e-122 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Arst8g01201 HSF_DNA-bind 2.8e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01201 K09419 - gmx:100794605 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g01201 8 16476184 16478174 Arst8g01201 8 16476184 16478174 ECH
Arst6g03892 6 107183186 107185984 Arst8g01201 8 16476184 16478174 PCT