Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Arst8g01082 | ATGGGGAGAGGGAAGATCGTGATAAGGAGGATCGATAACTCGACGAGTAGGCAAGTAACGTTCTCGAAGCGGAGAAGCGGTTTGCTGAAGAAGGCGAAGGAGCTTTCGATTCTTTGCGATGCTGAGGTTGGAGTTGCGATCTTCTCCAGCACCGGAAAACTCTATGATTACGCCAGTTCCAGCATGAAATCAGTGATTGATCGATACAACAAAACAAAAGAGGAGCATAACCCCCTTGGAAGTTCAACCTCTGAGATTAAGTTTTGGCAAAGGGAGGCAGCCATGTTAAGGCAACAATTGCAGAACTTGCAAGAAAGTCACCGGCAAATGATGGGAGAAGAACTGTCAGGTATGACTGTCAAAGATTTACATAGTTTAGAGAACCAACTGGAAGTTAGCCTCCATGGTGTCCGTGCAAAAAAGGAACAACTTTTAATGGAGGAAATACAGGAACTGAATCGAAAGGGGAACCTCATACACCAAGAAAATATGGAACTGTATAAGAAGGTAAACCTAATTCGTCAAGAAAACATGGAACTGAAGAAGAAGGTCTATGGAACAAGAAATGGGAGTGGAACAGACAGAAACTCTGTTCTAACAAATGGTATAAGCATAGAGGAAGACTTGCAGGTTCCTGTGAATCTCCAGCTAAGCCAACCACAGCAACAGAACTATGAGGCCACTTCAGGAGCCACAAAGTTGGGCAGATTGTAG | 714 | 0.4412 | MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVAIFSSTGKLYDYASSSMKSVIDRYNKTKEEHNPLGSSTSEIKFWQREAAMLRQQLQNLQESHRQMMGEELSGMTVKDLHSLENQLEVSLHGVRAKKEQLLMEEIQELNRKGNLIHQENMELYKKVNLIRQENMELKKKVYGTRNGSGTDRNSVLTNGISIEEDLQVPVNLQLSQPQQQNYEATSGATKLGRL | 237 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Arst8g01082 | 237 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Arst8g01082 | 237 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Arst8g01082 | 237 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 3 | 208 | - | - | |
Arst8g01082 | 237 | ProSiteProfiles | K-box domain profile. | 86 | 176 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Arst8g01082 | 237 | Coils | Coil | 163 | 183 | - | - | |
Arst8g01082 | 237 | SUPERFAMILY | SRF-like | 2 | 86 | IPR036879 | GO:0003677|GO:0046983 | |
Arst8g01082 | 237 | Gene3D | - | 13 | 92 | IPR036879 | GO:0003677|GO:0046983 | |
Arst8g01082 | 237 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Arst8g01082 | 237 | Coils | Coil | 86 | 113 | - | - | |
Arst8g01082 | 237 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Arst8g01082 | 237 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Arst8g01082 | 237 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Arst8g01082 | 237 | Pfam | K-box region | 83 | 170 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Arst8g01082 | 237 | FunFam | MADS-box transcription factor MADS-MC | 13 | 85 | - | - | |
Arst8g01082 | 237 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Arst8g01082 | Arst-Chr8 | 14956349 | 14977044 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Arst8g01082 | 1 | 231 | MADS-box Gene Family | AT2G22630 | 57.576 | 2.49e-90 | 264 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-MIKC | Arst8g01082 | K-box | 5.5e-28 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Arst8g01082 | K09264 | - | gmx:100812413 | 388.652 |