Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01081 ATGGGGAGAGGGAAGATCGTGATAAGGAGGATCGATAACTCGACGAGTAGGCAAGTAACGTTCTCGAAGCGGAGAAGCGGTTTGCTGAAGAAGGCGAAGGAGCTTTCGATTCTTTGCGATGCTGAGGTTGGAGTTGCGATCTTCTCCAGCACCGGAAAACTCTATGATTACGCCAGTTCCAGCATGAAATCAGTGATTGATCGATACAACAAAACAAAAGAGGAGCATAACCCCCTTGGAAGTTCAACCTCTGAGATTAAGTTTTGGCAAAGGGAGGCAGCCATGTTAAGGCAACAATTGCAGAACTTGCAAGAAAGTCACCGGCAAATGATGGGAGAAGAACTGTCAGGTATGACTGTCAAAGATTTACATAGTTTAGAGAACCAACTGGAAGTTAGCCTCCATGGTGTCCGTGCAAAAAAGGAACAACTTTTAATGGAGGAAATACAGGAACTGAATCGAAAGGGGAACCTCATACACCAAGAAAATATGGAACTGTATAAGAAGGTCTATGGAACAAGAAATGGGAGTGGAACAGACAGAAACTCTGTTCTAACAAATGGTATAAGCATAGAGGAAGACTTGCAGGTTCCTGTGAATCTCCAGCTAAGCCAACCACAGCAACAGAACTATGAGGCCACTTCAGGAGCCACAAAGTTGGGCAGATTGTAG 672 0.4464 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVAIFSSTGKLYDYASSSMKSVIDRYNKTKEEHNPLGSSTSEIKFWQREAAMLRQQLQNLQESHRQMMGEELSGMTVKDLHSLENQLEVSLHGVRAKKEQLLMEEIQELNRKGNLIHQENMELYKKVYGTRNGSGTDRNSVLTNGISIEEDLQVPVNLQLSQPQQQNYEATSGATKLGRL 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01081 223 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Arst8g01081 223 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Arst8g01081 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst8g01081 223 Coils Coil 86 113 - -
Arst8g01081 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 207 - -
Arst8g01081 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Arst8g01081 223 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Arst8g01081 223 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Arst8g01081 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst8g01081 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst8g01081 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst8g01081 223 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst8g01081 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Arst8g01081 223 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01081 Arst-Chr8 14956347 14977044 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01081 1 217 MADS-box Gene Family AT4G37940 60.369 1.57e-90 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst8g01081 K-box 1.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01081 K09264 - gmx:100778970 359.762