Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01076 ATGTCTACCCAAGGGGTGCGGTTGCACATTCAAGATCGCTATGTGGTGATGGATAATGGTATAGTTCAAGTGACGTTATCGAATCCAGGTGGAATTGTTACTGGGATAGCATATAATGGTGTTGATAATTTGCTTGAAGTTCTCAACAAGGAGACTAATAGAGGGTACTGGGATCTTGTTTGGGGTGCACCAGGAATCAAAGGAACCTTTGATGTGTATGGCAACAGTACCTTCTTTTCAATTCTCAATAAAGCTATATTCAAATGCGACTACTTACTAGATTTCATAATTAAATCGGGAGTGGCTTTTATGTCGCACCTGAGTAGAAATATCTCCAGGATTCAAGGAACGTTTTTCAGAGTTATAGTTCAAAATGATGAACAAGTTGAGGTTTCATTTACAAGAATGTGGGATCCTTCTCTTGAGGGAAAGTTTGTCCCCTTAAACATTGACAAAAGATTCATACTGCTCCGAGGTTCATCAGGCTTCTACTCTTATGGAATTTATGAGCACTTAAGTGGATGGCCAGACTTCGATCTTAGTGAAACAAGGATCACTTTCAAGCTTAGAAAACACATGTTTCAATACATGGCTATGGCAGACAACAGGCGAAGGCTTATGCCTCTTCCGGATGATCGATTACCAGGGAGATGCCAAACCTTGGCATACCCAGAAGCTGTCAAATTAGTCAATCCCAAGGATCCTCAACTGAAAGATGAGGTGGATGACAAGTATCAATATTCCTGCGACAACATAGATAATAAAGTCCATGGGTGGATATCTTTCAATCCACCAGTGGGATTTTGGCAGATCACACCAAGTGATGAGTTTCGTTCTGGTGGACCGCACAAGCAGAATTTGACCTCACATGTAGGCCCCACCACACTTGCAATGTTTCTTAGTGGTCACTATGCGGGGCAAGATTTGAACCCCAAATTCAAAGATGGTGAACCATGGAAGAAGGTTTTTGGTCCAGTATTCATATATCTTAATTCTGGACCAGTTGGTGATGACCCACATTGGCTCTGGGAGGACGCCAAAATACAGATGATGAATGAAGTTCAAAGCTGGCCATATTCTTTCCCAGCTTCAGAGGATTTTCCAAAGTCGGATCAAAGGGGCAACGTTGGTGGCAGACTGCTCGTCTTAGACAGATATGTCAGCACAGACTTAATATCTGCAAATGGTGCTTATGTTGGTCTAGCCCCGCCAGGAGATGCCGGGTCATGGCAAAGAGAATGCAAGCACTATCAATTCTGGACCAGAGCAGATGAGAATGGATTTTTTACAATCAGGAACATACGTGCTGGCGACTATAACCTTTATGCCTGGGTTCCTGGTTTTGTTGGGGACTACAAATTGGATGATTTGATGAAGATAACCCCAGGTTCTAATATTGAAGTGGGTGAACTGGTATATGAGCCTCCAAGGGTTGGTCCAACATTGTGGGAAATAGGTATTCCTGATCGAACTGCTGCAGAATTTTATGTTCCTGATCCCAAGCCAGAACATATTAATAAGCTTTTTATCAACCATCCTGAAAGGTTCAGACAGTACGGATTATGGGAAAGGTATATAGAATTGTATCCGGAATCAGATTTGGTTTACACAGTTGGTGTCAGTGACTATAGGAGAGATTGGTTTTATGCCCATATTCCCAGAAAGAAAGAGGATAATACCCATCAAGGAACAACTTGGCAAATCAAGTTTGAACTCAATGATGTGGTTCAAGGAAGTACTTATACACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGATTCGAGTAAATGATCCGAATGCAAGGCGTCCTCTGTTTACGACTGGGCTAATAGGGAGGGATAACTCGATTGCAAGACATGGAATTCATGGACTCTATTGGCTGTACAGTGTGAATGTACCTGGTTCTCTTCTTATAAATGGCCCCAACACTTTATATTTTACTCAACCACGTTGCAACAATTGTTTCCAGGGTATCATGTATGATTATATTCGTATGGAAGGACCTCCTTGA 2022 0.4199 MSTQGVRLHIQDRYVVMDNGIVQVTLSNPGGIVTGIAYNGVDNLLEVLNKETNRGYWDLVWGAPGIKGTFDVYGNSTFFSILNKAIFKCDYLLDFIIKSGVAFMSHLSRNISRIQGTFFRVIVQNDEQVEVSFTRMWDPSLEGKFVPLNIDKRFILLRGSSGFYSYGIYEHLSGWPDFDLSETRITFKLRKHMFQYMAMADNRRRLMPLPDDRLPGRCQTLAYPEAVKLVNPKDPQLKDEVDDKYQYSCDNIDNKVHGWISFNPPVGFWQITPSDEFRSGGPHKQNLTSHVGPTTLAMFLSGHYAGQDLNPKFKDGEPWKKVFGPVFIYLNSGPVGDDPHWLWEDAKIQMMNEVQSWPYSFPASEDFPKSDQRGNVGGRLLVLDRYVSTDLISANGAYVGLAPPGDAGSWQRECKHYQFWTRADENGFFTIRNIRAGDYNLYAWVPGFVGDYKLDDLMKITPGSNIEVGELVYEPPRVGPTLWEIGIPDRTAAEFYVPDPKPEHINKLFINHPERFRQYGLWERYIELYPESDLVYTVGVSDYRRDWFYAHIPRKKEDNTHQGTTWQIKFELNDVVQGSTYTLRVAIASATLAELQIRVNDPNARRPLFTTGLIGRDNSIARHGIHGLYWLYSVNVPGSLLINGPNTLYFTQPRCNNCFQGIMYDYIRMEGPP 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01076 673 Pfam Polysaccharide lyase family 4, domain III 481 669 IPR029411 -
Arst8g01076 673 Pfam Polysaccharide lyase family 4, domain II 395 467 IPR029413 -
Arst8g01076 673 SUPERFAMILY Starch-binding domain-like 414 468 IPR013784 GO:0030246
Arst8g01076 673 CDD RGL4_M 372 471 IPR029413 -
Arst8g01076 673 FunFam Rhamnogalacturonate lyase B 369 468 - -
Arst8g01076 673 Pfam Rhamnogalacturonate lyase family 110 241 IPR010325 -
Arst8g01076 673 Pfam Rhamnogalacturonate lyase family 6 83 IPR010325 -
Arst8g01076 673 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 673 - -
Arst8g01076 673 SUPERFAMILY Galactose-binding domain-like 479 670 IPR008979 -
Arst8g01076 673 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 673 - -
Arst8g01076 673 SUPERFAMILY Galactose mutarotase-like 175 337 IPR011013 GO:0003824|GO:0005975|GO:0030246
Arst8g01076 673 Gene3D - 102 344 IPR014718 GO:0030246
Arst8g01076 673 CDD RGL4_N 6 333 - -
Arst8g01076 673 CDD RGL4_C 483 670 - -
Arst8g01076 673 Gene3D - 370 468 - -
Arst8g01076 673 Gene3D - 478 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01076 Arst-Chr8 14903695 14909203 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01076 1 673 Polysaccharide Lyase AT1G09910 66.122 0.0 936
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01076 K18195 - gmx:100814185 1113.98