Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01074 ATGACAACACTCCTCGGGGTGCAACTCACCATTCAAGATCGTCATGTGGTGGTGGAGAATGGCATAGTAAGAGTAACGATTTCAAATCCAGAAGGAATAGTGACTGGAATTCAGTATAATGGAATCGACAACTTGCTTGAAGTTTTGAATGACGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCAACAAGTACAGGAACCACTGGCAAATTTGACGTAATAAAAGGAACCGCTTTCAAAGTAATAATGGAAAATGAGGATCAAGTTGAGATTTCTTTCACAAGAACATGGGACGTGTCCCTCAAAGACCAGCTAGTTCCTTTGAATATCGATAAAAGGTTCATAATGCTTCGTGGTACCTCGGGGTTCTATTCATATGCTATTTACGAACACTTAAGCGAGTGGCCTGCTTTCAATCTTGACGAAACGAGAATTGCTTTCAAGCTCAGAAAAGACAAGTTCCATTATATGGCAATGGCGGATAACCGACAAAGAAATATGCCACTTCCTGATGATCGAGTGCCACCAAGAGGCCAACCCCTTGCATATCCCGAAGCAGTTCTTTTTGGCGATCCTCTTGAACCTGAATTCAAAGGGGAGGTAGATGACAAGTACCAATATTCATGTGACAACAAAGATAGCCAAGTTCATGGATGGGTGTGCATGGATCCTGCCGTTGGATTTTGGCTAATTACGCCCAGCAATGAGTTCCGTTCTGGTGGGCCCCTCAAACAAAACTTAACCTCCCACGTTGGACCCACCACGCTCGCTGTGTTTCTAAGTGCCCATTATAGTGGAGAGGATTTGGTGCCAAAATTCAAAGAAGGAGAAGCATGGAAGAAAGTTTTTGGTCCAGTTTTCATTTATTTGAATTCTCCTAATGACGATAATGGTGATGTTGAACCCCAAAAAATGCTCTGGGAAGATGCTAAACTTCAGATGAATGTAGAAGTACAGAGTTGGCCTTACACTTTTCCCGAATCAGATGATTACCCAAAGTGGTACGAACGGGGTATTGTTACTGGCAGGTTATTGGTTAGAGAGAGGTATATAAGCGATGATGACTACATAGCAGCAAAAGGTGCATATGTTGGTTTGGCCCCCCCGGGAGATGTTGGATCATGGCAAAGAGAATGCAAGAATTATCAGTTCTGGAGTGAAGCAGATGAAGATGGGTATTTCTCCATCAGCAATGTACGTGCTGGTGACTATAATTTATATGCATGGGTACCTGGTTTTATTGGAGACTACAAATACAATAATTCAATTATAACCATAGCGGAAGGGTCTACTACTTTCACTGAATTGGGTGATCTTGTTTATGAGCCACCAAGAGATGGACCAACACTTTGGGAAATAGGGATTCCAGATCGTACAGCTGCAGAGTTCTATGTTCCTGATCCAAATCCCAAATACATCAACAAACTCTACGTTAATCATCCTCAAAAATTTAGGCAATATGGATTATGGGAGAGATATGCAGAATTGTACCCCGACAAAGATTTAATCTACACTGTTGGAGTTAGTGATTACACCAAAGATTGGTTCTTTGCCCAAGTTACAAGGAAGAAAGATGAGAATACATATCAAGGAACCACTTGGCAGATCAAGTTTCAGCTTTCCAATGTAAACAAAACCGGCACCTATAAACTGCGCCTGGCTTTGGCTTCCGCTACATTTTCTGAACTCCAGGTCCGAGTTAATGATCCAAAGGCAAGTCGTCCTCTATTCTCAAGTGGGTTGATAGGAAGGGATAACTCAATTGCAAGGCATGGAATTCATGGACTCTATTGGCTTTTCAATGTGGACATTCAAGGAACCAAACTTGTTGAAGGAGATAACACCATTTTTCTAACACAAGCTAGAGGCAATACCCCATTTCAGAACATCATGTATGATTACATTCGTTTGGAAGGTCCACCACAACCATCTAGTTTAAATAAAAACATTTAA 1962 0.4164 MTTLLGVQLTIQDRHVVVENGIVRVTISNPEGIVTGIQYNGIDNLLEVLNDESNRGYWDLVWSSPTSTGTTGKFDVIKGTAFKVIMENEDQVEISFTRTWDVSLKDQLVPLNIDKRFIMLRGTSGFYSYAIYEHLSEWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRVPPRGQPLAYPEAVLFGDPLEPEFKGEVDDKYQYSCDNKDSQVHGWVCMDPAVGFWLITPSNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKEGEAWKKVFGPVFIYLNSPNDDNGDVEPQKMLWEDAKLQMNVEVQSWPYTFPESDDYPKWYERGIVTGRLLVRERYISDDDYIAAKGAYVGLAPPGDVGSWQRECKNYQFWSEADEDGYFSISNVRAGDYNLYAWVPGFIGDYKYNNSIITIAEGSTTFTELGDLVYEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYVNHPQKFRQYGLWERYAELYPDKDLIYTVGVSDYTKDWFFAQVTRKKDENTYQGTTWQIKFQLSNVNKTGTYKLRLALASATFSELQVRVNDPKASRPLFSSGLIGRDNSIARHGIHGLYWLFNVDIQGTKLVEGDNTIFLTQARGNTPFQNIMYDYIRLEGPPQPSSLNKNI 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01074 653 SUPERFAMILY Starch-binding domain-like 383 436 IPR013784 GO:0030246
Arst8g01074 653 Gene3D - 339 439 - -
Arst8g01074 653 Pfam Rhamnogalacturonate lyase family 7 204 IPR010325 -
Arst8g01074 653 SUPERFAMILY Galactose-binding domain-like 449 641 IPR008979 -
Arst8g01074 653 Pfam Polysaccharide lyase family 4, domain III 452 640 IPR029411 -
Arst8g01074 653 Gene3D - 450 641 - -
Arst8g01074 653 CDD RGL4_M 339 442 IPR029413 -
Arst8g01074 653 CDD RGL4_C 454 641 - -
Arst8g01074 653 CDD RGL4_N 9 295 - -
Arst8g01074 653 Gene3D - 7 308 IPR014718 GO:0030246
Arst8g01074 653 FunFam Rhamnogalacturonate lyase B 336 436 - -
Arst8g01074 653 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 12 644 - -
Arst8g01074 653 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 12 644 - -
Arst8g01074 653 SUPERFAMILY Galactose mutarotase-like 9 297 IPR011013 GO:0003824|GO:0005975|GO:0030246
Arst8g01074 653 Pfam Polysaccharide lyase family 4, domain II 363 435 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01074 Arst-Chr8 14894277 14902453 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01074 7 643 Polysaccharide Lyase AT1G09890 70.938 0.0 945
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01074 K18195 - gmx:100814721 1153.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g01074 8 14894277 14902453 Arst8g01074 8 14894277 14902453 ECH