Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01072 ATGAACAACTACTTCTTCTTCCTCTTCCTCTTCTTCATCTCTTCTTTTACCTATTCATCAGGGATGCGCTTGGACATTCACGATAAACATGTGGTTATGGATAATGGCATAGTTGAGGTCACTATATCAAATCCTGAAGGATTTGTTACAGAGATTCGGTATAATGGAATCGACAATTTGCTTGAACTTCTTAACAAGGAATCTAACCGAGGGTACTTCGATATGGTGTGGGATGAAGGTAAGTCAAAGAGGAAAAAAGGTGAATTTGACAGAATGGAAGCTACAAATATGAGTGTGATAGTGGAAAATGAGGAACAAGTGGAGCTATCATTCACAAGAATGTGGAATTCTTCTCTTCAGGGATTGTATCCCCCACTCAACATTGATAAAAGGTTTGTAATGGTTAGTGGGTCGTCGGGGTTCTATACCTATGCAATATACGAGCATTTGGATGAATGGCCAGGATTCAATCTCTCCAATACAAGGATTGCTTTCAAGCTTAGAAAGGACAAGTTCCATTACATGGTGGTAGCAGGGGACAGACAGAGATTTATGCCTCTTCCTGATGATAGAGAAGAAGGAAGAGGCCAAGTTCTTGCTTATCCTGAAGCTGTCTTGCTTGTCAATCCTATTGAGCCTCAATTCAAAGGAGAGGTGGATGACAAGTATCAATATTCATGTGAGAGCAGAAACAACGAAGTTCATGGTTGGATATCCATGGATCCACCCAAATCCACCGGCTTCTGGATCATCACCCCAAGCAATGAGTTCCGATCCGGCGGCCCCCTCAAACAATATCTCGCTTCTCACGTCGGCCCCACTTCCTTATCCGTATTTCATAGCACACACTATTCCGGGGTAGATCTGATAATGAGGTTTAGGCCCAATGAAGCCTGGAAGAAAGTATATGGGCCCATATTTATATATCTTAATTCACTCTCTAATGGAGAAAGCCCAACAGGGCTCTGGGACGACGCCAGACAACAGATGGTGAATGAAATTGAAAGCTGGCCCTATAAGTTTCCAGCTTCAGAGGATTTTGTGAAAGCTGAGCAAAGGGGTCAAGTTGAAGGAAGATTGCTTGTCCGTGACAGGTACATGAGTGATGCATTCATCCCAGTTAGCAGTGCTTCTGTGGGATTAGCTTCTCCAGGAGAGCCTGGCTCTTGGCAAAGGGAATCCAAGGGTTATCAATTTTGGACCATTACTGATGATAAAGGCTATTTCTCAATTACTAACATACTCCCTGGGAAATATAATGTCTACTCCTGGGTCAAAGGATACATTGGTGACTATAAATATGATAAAGTCATTAACATAACTTCAGGGAGTGAAGTTAATGTGGGTGAAATTGTTTATGAGGCACTAAGAGAAGGTGCTACTTTGTGGGAAATAGGTATACCTGATCGTTCTGCTGCTGAGTTCTATGTTCCTGATCCTAACCCCAAATACATTAACAGAATTTATGTCAACCATACAGATAGGTATAGGCAATATGGGTTGTGGGAGAGATATGCTGATTTGTATCCAAAAGAAGACTTAGTATACAATGTTGGCACAAGTGACTATACAAAAGATTGGTTCTTTGCTCAGGTTAACAGGAAGAAGGGAAATAAGACATACCAAGCAACCACTTGGCAAATTAATTTCAATTTGGAAAATGTGAATGCCAATGGAACTTACAAATTGCGAGTGGCTCTGGCCTCTGTACATTATGCCGAGTTACAGATTCGGGTGAAGAATTCATCAGAAGCAAATCCACCATTATTTACAAGTGGAGTTATTGGATCAGAAAACACCATAGCTAGACATGGAATTCATGGGTTCTATTGGCTTTTCAACGTTGATATAAAAGGCACTCTTCTTGCACAGGGAAATAATTCAATCTTTTTTTCACAACCCAATAATTCAAGTCCCTTTCAAGGAATTTTGTATGATTATATTCGTCTAGAAGCACCACCCCATCACACAAATTTCACACCAAAATTAAATATTCTT 1998 0.4074 MNNYFFFLFLFFISSFTYSSGMRLDIHDKHVVMDNGIVEVTISNPEGFVTEIRYNGIDNLLELLNKESNRGYFDMVWDEGKSKRKKGEFDRMEATNMSVIVENEEQVELSFTRMWNSSLQGLYPPLNIDKRFVMVSGSSGFYTYAIYEHLDEWPGFNLSNTRIAFKLRKDKFHYMVVAGDRQRFMPLPDDREEGRGQVLAYPEAVLLVNPIEPQFKGEVDDKYQYSCESRNNEVHGWISMDPPKSTGFWIITPSNEFRSGGPLKQYLASHVGPTSLSVFHSTHYSGVDLIMRFRPNEAWKKVYGPIFIYLNSLSNGESPTGLWDDARQQMVNEIESWPYKFPASEDFVKAEQRGQVEGRLLVRDRYMSDAFIPVSSASVGLASPGEPGSWQRESKGYQFWTITDDKGYFSITNILPGKYNVYSWVKGYIGDYKYDKVINITSGSEVNVGEIVYEALREGATLWEIGIPDRSAAEFYVPDPNPKYINRIYVNHTDRYRQYGLWERYADLYPKEDLVYNVGTSDYTKDWFFAQVNRKKGNKTYQATTWQINFNLENVNANGTYKLRVALASVHYAELQIRVKNSSEANPPLFTSGVIGSENTIARHGIHGFYWLFNVDIKGTLLAQGNNSIFFSQPNNSSPFQGILYDYIRLEAPPHHTNFTPKLNIL 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01072 666 SUPERFAMILY Galactose mutarotase-like 30 314 IPR011013 GO:0003824|GO:0005975|GO:0030246
Arst8g01072 666 Gene3D - 348 449 - -
Arst8g01072 666 Pfam Polysaccharide lyase family 4, domain III 461 650 IPR029411 -
Arst8g01072 666 CDD RGL4_C 463 651 - -
Arst8g01072 666 Pfam Rhamnogalacturonate lyase family 26 219 IPR010325 -
Arst8g01072 666 CDD RGL4_M 352 451 IPR029413 -
Arst8g01072 666 Pfam Polysaccharide lyase family 4, domain II 376 447 IPR029413 -
Arst8g01072 666 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 28 654 - -
Arst8g01072 666 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 28 654 - -
Arst8g01072 666 SUPERFAMILY Galactose-binding domain-like 459 651 IPR008979 -
Arst8g01072 666 Gene3D - 23 324 IPR014718 GO:0030246
Arst8g01072 666 SUPERFAMILY Starch-binding domain-like 349 449 IPR013784 GO:0030246
Arst8g01072 666 Gene3D - 458 651 - -
Arst8g01072 666 FunFam Rhamnogalacturonate lyase B 349 448 - -
Arst8g01072 666 CDD RGL4_N 22 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01072 Arst-Chr8 14851086 14872187 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01072 20 653 Polysaccharide Lyase AT1G09890 64.835 0.0 860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01072 K18195 - gmx:100786488 1042.34