Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01071 ATGAGATTCCATCCATTTTGTCCCCTTGATATACCATATCCCATGAGGCACTTTCAGAGCTTGTTCTATGTGAGATATTTGCCGCCGGTGGCCGGATCCATGTCGTCGCAGGCAGTGAAGTTGCGTGTCGACGACAATTATGTTGTGATGGACAATGGTATACTTGAAGTGTATTTATCCAAAAAGGGTGGATTTATCAGTGCAATACAATATAATGGTGTTGATAATTTGCTTGAAGTTCTTAATGAAGCACATGATAGAGGGTATTGGGACATTGTTTGGAATGAAGCAGATAGCACAGGAACAACCGGGATATATGAAAGGGTCGTGGGGACAAGTTATAAAGTTATAGTGCAAAATGATGAACAATTGGAGATTTCATTTACCAAAACATGGGATCGATCATCCATGGAGGAAAAGCAGTCTCCTCTAAATATTGACATTAGATATGTGATGCTACGCAATTCCTGTGGCTTGTATTGTTATAGCATCTTTGAACACCGAAAAGAATGGCCTGCTTTCAACGTACCTCAAATCAGAATGGTCTTTAAGCTTCGAAAAGAAAAGTATNNNTATATGGCTATAGCGGATAATAAGCAAAGGCTAATGCCTGTTCCAGATGACCGGTTACCAACAAGAGGAAGAACACTTGTTCCCCCTGAAGCTGTATTGCTTGTTGATCCTATTGAACCACACTTCAAGGGAGAGGTGGATGACAAGTATCAATACTCAAGCAATAACAAAGATATTAAGGTGCATGGATGGATCAGCTCCAAATCTGAAACTAATCCTGCAATGGGGTTTTGGGTAATTATACCTACCAATGAGTTCCAATCAGGTGGCCCTCTTAAACAGAACCTCACCTCTCATGTTGGACCTATTAGTCTTGCAATGTTTCTGAGTTCTCATTACGCAGGAGAGGATGTTGTTATGAGAGTCCAAAGAAATGAGTCATGGAAAAAGGTTTTTGGGCCAATCTTTATTTATCTCAACACTTCATCAGAAAACCAAGTCCAACCATCACTATGGAAGGATGCCAAAGACCAGATGAGCAAAGAAGTTCAAAGCTGGCCCTATGATTTTCCAGCTTCAGGGGATTTTCATAAGTCCCACCAACGAGGCAGTGTTTATGGCACATTAAAAGTCCAAGACAGGTTCATAAGTGATCACCAGATATTGGCAGAAGGTGCATATATTGGTCTGGCACCACCAGGAGAACCTGGATCCTGGCAAACAGAATGCAAGGGATATCAATTTTGGACTCAAACCAATAAAAGAGGCTTTTTCTCTATCAACAATATACACAGTGGGAATTACAATCTCTATGCTTGGATCCCTGGTTTCATTGGAGATTATTGTAACAATGTTGTCCTCACCATCAAGCCAGGTAATAAAGTAAATGTCGGTGAGATTGTATATGAAGCCCCAAGAAATGGACCAACATTATGGGAAATAGGCATTCCCGATCGCACTGCAGCTGAATTTTATGTTCCTGATCCTAATCCAAATTACATTAACACACTTTATCTCAATCATCCAGATAGGTTTAGGCAGCATGGATTATGGGAAAGATATGCAGATTTATATCCAAATGAAGATTTGATTTACACAGTTGGACATAGTGATTATACAAAACATTGGTTCTTTGCCCATGTTACCAGGAAGAGAGATGATGGCACTTTCCATGGAACAACATGGCAAATTAAGTTCAAGCTTCATAATGTTCAGAAAAATGGAACTTATAAACTGCGACTAGCACTTGCAGCCGTTAATTTCTCCCAATTACAGGTTAGAGTGAATAATCCAAAAGAAGATCCACCAATGTTTACAAGTGGGTTGATTGGGAAGGACAACGCCATAGCTAGACATGGAATTCATGGACTCTATAGACTATACAACATTGATGTGTCATCTCATTTACTAGTCAAAGATGATAACATTATATATCTTACACAAACTATAGCTAATGGTCCCTTTCAAGGCATAATGTATGATTATATTCGTTTGGAAGCTCCTCCTTCTCATAAATAA 2031 0.3944 MRFHPFCPLDIPYPMRHFQSLFYVRYLPPVAGSMSSQAVKLRVDDNYVVMDNGILEVYLSKKGGFISAIQYNGVDNLLEVLNEAHDRGYWDIVWNEADSTGTTGIYERVVGTSYKVIVQNDEQLEISFTKTWDRSSMEEKQSPLNIDIRYVMLRNSCGLYCYSIFEHRKEWPAFNVPQIRMVFKLRKEKYXYMAIADNKQRLMPVPDDRLPTRGRTLVPPEAVLLVDPIEPHFKGEVDDKYQYSSNNKDIKVHGWISSKSETNPAMGFWVIIPTNEFQSGGPLKQNLTSHVGPISLAMFLSSHYAGEDVVMRVQRNESWKKVFGPIFIYLNTSSENQVQPSLWKDAKDQMSKEVQSWPYDFPASGDFHKSHQRGSVYGTLKVQDRFISDHQILAEGAYIGLAPPGEPGSWQTECKGYQFWTQTNKRGFFSINNIHSGNYNLYAWIPGFIGDYCNNVVLTIKPGNKVNVGEIVYEAPRNGPTLWEIGIPDRTAAEFYVPDPNPNYINTLYLNHPDRFRQHGLWERYADLYPNEDLIYTVGHSDYTKHWFFAHVTRKRDDGTFHGTTWQIKFKLHNVQKNGTYKLRLALAAVNFSQLQVRVNNPKEDPPMFTSGLIGKDNAIARHGIHGLYRLYNIDVSSHLLVKDDNIIYLTQTIANGPFQGIMYDYIRLEAPPSHK 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01071 676 Gene3D - 369 469 - -
Arst8g01071 676 FunFam Rhamnogalacturonate lyase B 369 468 - -
Arst8g01071 676 SUPERFAMILY Galactose-binding domain-like 478 670 IPR008979 -
Arst8g01071 676 CDD RGL4_M 372 471 IPR029413 -
Arst8g01071 676 Gene3D - 479 670 - -
Arst8g01071 676 SUPERFAMILY Galactose mutarotase-like 44 334 IPR011013 GO:0003824|GO:0005975|GO:0030246
Arst8g01071 676 Pfam Polysaccharide lyase family 4, domain II 395 467 IPR029413 -
Arst8g01071 676 SUPERFAMILY Starch-binding domain-like 369 469 IPR013784 GO:0030246
Arst8g01071 676 Gene3D - 38 347 IPR014718 GO:0030246
Arst8g01071 676 Pfam Polysaccharide lyase family 4, domain III 481 669 IPR029411 -
Arst8g01071 676 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 35 673 - -
Arst8g01071 676 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 35 673 - -
Arst8g01071 676 CDD RGL4_N 39 334 - -
Arst8g01071 676 Pfam Rhamnogalacturonate lyase family 36 237 IPR010325 -
Arst8g01071 676 CDD RGL4_C 483 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01071 Arst-Chr8 14814605 14834481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01071 39 672 Polysaccharide Lyase AT1G09890 59.969 0.0 807
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01071 K18195 - gmx:100815677 988.793