Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01058 ATGTACGGCTCCATGAACGTTCCCAATCAGATTTCCGCCGCCGAAGACAACGGCGCCGCCGCCTCCGACTCCGTCGACAACCACCACCACAATCATTATAATTCCCACGGCCTCGAGGACGGTGCCGGCGGAGTCGTCGAAGATGCCGACACCGTGTACGTTTCCGGTGGCGGAGGCCCCGACATGTCTATAATTCCCTGTGAAGATTCTAGCCAGCTCACGCTCTCGTTTCGTGGCCAAGTCTATGTCTTTGATTCCGTTACACCCGAAAAGGTTCAAGCGGTGTTATTGTTGTTGGGAGGGTGCGAAATGCCTTCGTCGGGTTCGCAATGTGCAGAGTTATCGCCTCAGAATCAGAGGGGTGCAGTGGAATTCCCTGGAAGGTGCAGTCAGCCACATCGAGCGGCATCATTGAATAGGTTCAGACAGAAGAGGAAAGAGCGATGCTTCGACAAGAAAGTTAGATATAGTGTGCGTCAAGAAGTTGCACTCAGGATGCAACGTAATAAAGGCCAATTTACTTCATCTAAGAAACAAGATGGAGCTAATAGTTGTGGTTCAGACCAAGAGTCAATGCAAGATGCTGTTCAATCAGAAACATCATGCACACACTGTGGCATAAGTTCAAAAGCCACCCCAATGATGCGGAGAGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTATTTTGGTCAAATAGGGGTACGATGAGGGATCTTTCCAAGAGAAACCAGGAACACACACTTGCCCTACCCGAGCCGGTTAATGAAGGCAATAACACGGATTGTCGAACTGCTGTCCCTGAAAATATCAATGTTACTGCTTTCTCTGAAAATGATAACGCATCATTGGCAACTGATCGATGA 873 0.4948 MYGSMNVPNQISAAEDNGAAASDSVDNHHHNHYNSHGLEDGAGGVVEDADTVYVSGGGGPDMSIIPCEDSSQLTLSFRGQVYVFDSVTPEKVQAVLLLLGGCEMPSSGSQCAELSPQNQRGAVEFPGRCSQPHRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSSKKQDGANSCGSDQESMQDAVQSETSCTHCGISSKATPMMRRGPSGPRSLCNACGLFWSNRGTMRDLSKRNQEHTLALPEPVNEGNNTDCRTAVPENINVTAFSENDNASLATDR 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01058 290 SMART tify_2 66 101 IPR010399 -
Arst8g01058 290 Gene3D - 192 251 IPR013088 GO:0006355|GO:0008270
Arst8g01058 290 ProSitePatterns GATA-type zinc finger domain. 202 229 IPR000679 GO:0006355|GO:0043565
Arst8g01058 290 ProSiteProfiles GATA-type zinc finger domain profile. 196 247 IPR000679 GO:0006355|GO:0043565
Arst8g01058 290 SMART GATA_3 196 249 IPR000679 GO:0006355|GO:0043565
Arst8g01058 290 ProSiteProfiles CCT domain profile. 134 176 IPR010402 GO:0005515
Arst8g01058 290 MobiDBLite consensus disorder prediction 167 192 - -
Arst8g01058 290 PANTHER GATA TRANSCRIPTION FACTOR 28 12 274 IPR045280 GO:0006355
Arst8g01058 290 Pfam CCT motif 134 176 IPR010402 GO:0005515
Arst8g01058 290 Pfam GATA zinc finger 202 239 IPR000679 GO:0006355|GO:0043565
Arst8g01058 290 MobiDBLite consensus disorder prediction 22 36 - -
Arst8g01058 290 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 256 - -
Arst8g01058 290 Pfam tify domain 70 100 IPR010399 -
Arst8g01058 290 ProSiteProfiles Tify domain profile. 66 101 IPR010399 -
Arst8g01058 290 MobiDBLite consensus disorder prediction 15 43 - -
Arst8g01058 290 CDD ZnF_GATA 201 247 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01058 Arst-Chr8 14635639 14639568 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01058 66 289 Tify Gene Family AT4G24470 57.500 5.62e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Arst8g01058 CCT 1.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01058 - - pvu:PHAVU_008G182900g 405.216