Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01027 ATGACGAGGACGAAGATAAAGATAAAGAAGATCGATAACGTAGCGGCAAGGCAGGTAACGTTTTCGAAGAGGAGGAGAGGGCTGTTGAAGAAGGCTCATGAGCTTTCTGTGCTTTGTGATGCTGAGCTTGCTCTCATTGTTTTCTCAGCTACCGGCAAGCTCTTTCATTATGCCAGTTCCAGTTTGGACGACACAATTAAAAGGTATAATAATGGGCACTTTCATGACATCAACAAATTGGAAAGACTTCCGAACCTGCAGATTGAGGATAGCGCCAAGTTATGTGAGGAAGTTGCAAAACGAACTCAAGAACTAAGGAGGATGGATGGTGAGGATCTTGAAGGATTAGACTTGAGGGGCTTGCAGAACTTGGAGAAAACACTTGAAACAGGACTCGATCGTGTCATTCGCATGAAGGAGAAGCGGATTATGGGTGAGATTTTGCAACTTCAGAATAAGGGGATTACGTTGGAAGAGGAGAACAAGCAGTTAAAGCAAAAGGTGGCTGTTCTGCGAAAAGGGAAAAATAATCCTCCATTTCTGTTGGATTTGGATGATACTACTGATGGGAATGATAACAATATTAATAATAATAATAATAATAATAATAATGATGAGGAAGGTACCTCATTCATAGAATCTATGAATAACATTAGCAGTTGCAGCAGTAACCTTCCTCCAGAGGATGATTCATCAGACACTTCTCTCAAGTTAGGGTTACCCTTCTCTAACTAA 735 0.4095 MTRTKIKIKKIDNVAARQVTFSKRRRGLLKKAHELSVLCDAELALIVFSATGKLFHYASSSLDDTIKRYNNGHFHDINKLERLPNLQIEDSAKLCEEVAKRTQELRRMDGEDLEGLDLRGLQNLEKTLETGLDRVIRMKEKRIMGEILQLQNKGITLEEENKQLKQKVAVLRKGKNNPPFLLDLDDTTDGNDNNINNNNNNNNNDEEGTSFIESMNNISSCSSNLPPEDDSSDTSLKLGLPFSN 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01027 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Arst8g01027 244 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Arst8g01027 244 Coils Coil 121 141 - -
Arst8g01027 244 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Arst8g01027 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Arst8g01027 244 MobiDBLite consensus disorder prediction 187 244 - -
Arst8g01027 244 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Arst8g01027 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst8g01027 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst8g01027 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst8g01027 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Arst8g01027 244 MobiDBLite consensus disorder prediction 176 244 - -
Arst8g01027 244 Pfam K-box region 90 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst8g01027 244 Coils Coil 147 167 - -
Arst8g01027 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst8g01027 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 197 - -
Arst8g01027 244 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01027 Arst-Chr8 14239491 14246535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01027 1 242 MADS-box Gene Family AT2G22540 46.559 2.01e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst8g01027 K-box 5.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01027 - - gmx:100776749 231.491