Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01025 ATGGCTTCTTCTTCTTTTTCATTCTTCTCGTTTTTAATAACATTCACTTTTCTTCTACTTGCTAACCTCAGCACTGTTGCATATGCAGTGGCTAATCAAACTAGAGAAACGCCGCCGCCGCCACCGCCACCACCGCCGCCGGATTCCCAAAGAACTTCATCCGCCTTCAAACCAGGCATGGCGGTGGTAGTTGGCATATTAACCACCATGTTCTCTCTCACCTTCCTCCTCCTCCTCTACATCAAGCACTGCAACGGCGGCGCCACCGACTCCACCGGAGCTACCGGAACCCGCTACAATTACACCTCACGCGCGGCAACGTTCGCTGGAAGAAAAAACTCCGGCATCGACCGTTCCATAGTGGAATCGCTTCCAATCTTCAGATTCGGGTCCCTCCGAGGACAAAAAGAAGGACTCGATTGCGCGATTTGTCTCGCAAAATTCGAGTCCTCTGAGGTCCTCCGGCTCCTCCCGAAATGCAAGCACGCGTTCCACGTGGAGTGCGTGGACACGTGGCTTGACGCGCACTCCACGTGTCCTTTGTGCCGGCATCGAGTGGATCCGGAGGACATTCTTCTGGTGGAAGACAACAATGCAGCCGCACCGGTGCACCCTCAGAGCGAGAACGAAGCGTGTTCGGAGAGGTACGAAACACGGCGAGTCTCCGGAAGGCATTCGTGGGTTGGTGAGAAAGAAGGAGGGTTCTTGGAGATCATTGTTGAGAACGAGAACGAAACAGAACGACGAAACGCAGCGCCAACGTCGTCGTTTAGGAGGTCGCTTGATAGTGCCACGTGTGCAACGACATCGAAATCGAATAATAATAATAATAACAAGAAGTGGTTAATGCGTCCAAGAAAAGACGGGATGCTGTTGGTGAAAACGACGACGCATCAGGAAGCGGAGAAAGAGAAAGAAAGGAGGAGCACCGGTGCGGAACGGAGGTTGGAGCACAGGATAATTGTCTCTCCTACCCCTAAACAATGCGGTTACGATTATAATGGTTTGTTGCGAGGGCAGTTACAACGGTGGAGCGATGTTCAGCCGTCGGATCTACTTTACCTGACATCGGAGATGATAATAAGTAAGCATAATAACGGTAGTGGTGCTGAAATCGGGGGCAATTTGGTAATTAACACGAGGAGTATGTCTGAGATAACGGGATTGAGCAGGTTTGTGAGGAACGGTAACGGTAACGGTAGTAACAGGGAAGAAGAACAAGGAGGAGGAAGAAGAAGAGAAGAGGGGGTTGTTACGAGGTGGCTGGGATGGATATCAAGGACGCAGACACAGCCAGCTGTACGGTAG 1308 0.5138 MASSSFSFFSFLITFTFLLLANLSTVAYAVANQTRETPPPPPPPPPPDSQRTSSAFKPGMAVVVGILTTMFSLTFLLLLYIKHCNGGATDSTGATGTRYNYTSRAATFAGRKNSGIDRSIVESLPIFRFGSLRGQKEGLDCAICLAKFESSEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRHRVDPEDILLVEDNNAAAPVHPQSENEACSERYETRRVSGRHSWVGEKEGGFLEIIVENENETERRNAAPTSSFRRSLDSATCATTSKSNNNNNNKKWLMRPRKDGMLLVKTTTHQEAEKEKERRSTGAERRLEHRIIVSPTPKQCGYDYNGLLRGQLQRWSDVQPSDLLYLTSEMIISKHNNGSGAEIGGNLVINTRSMSEITGLSRFVRNGNGNGSNREEEQGGGRRREEGVVTRWLGWISRTQTQPAVR 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01025 435 CDD RING-H2_EL5-like 140 183 - -
Arst8g01025 435 Pfam Ring finger domain 140 183 IPR001841 -
Arst8g01025 435 FunFam RING-H2 finger protein ATL43 116 190 - -
Arst8g01025 435 MobiDBLite consensus disorder prediction 33 54 - -
Arst8g01025 435 MobiDBLite consensus disorder prediction 392 414 - -
Arst8g01025 435 MobiDBLite consensus disorder prediction 246 287 - -
Arst8g01025 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 190 IPR013083 -
Arst8g01025 435 MobiDBLite consensus disorder prediction 249 280 - -
Arst8g01025 435 SMART ring_2 141 182 IPR001841 -
Arst8g01025 435 MobiDBLite consensus disorder prediction 35 51 - -
Arst8g01025 435 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 429 - -
Arst8g01025 435 SUPERFAMILY RING/U-box 125 188 - -
Arst8g01025 435 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01025 Arst-Chr8 14171790 14173928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01025 53 434 C3H Transcription Factor Family AT5G05810 45.185 2.02e-82 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01025 K19041 - cave:132189697 315.079