Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00979 ATGGCGCTACTCTCTAGTCTTTGCATTCCTTCAACCACGCACCTCTCTACGCACAACCATTCTTTCTCATCATTCTCCAACATTCACAACCATTCCATCACCACCATCAATCCATTCTCTTCCTTTCAATCCCTGCAATTATCACTTCCTTATCACACCCCAACACTCCTCACAACCAAACAAAACCCTAATTTCACTCTCAGATTTTCCCAACAGGCTCAGGCTGAGGCTGAAGCAGCACCTAGTGTCTCCACCGACGAACATGCAGAGCAAGAGGTTTCCCAGACTAGGTTGCTCGCCCAGAACGTGCCATGGACAAGCACCCCTGAAGACATTCGTTCTTTGTTCGAGAGATATGGAAAAGTGCTCCAAGTTGAGCTCTCAATGTATAACAAGACGAAGAACAGGGGTTTGGCATTTGTGGAAATGAGTTCACCAGAAGAGGCTCGTGCCGCTCTCCAGAATCTCGAATCGTATGAGTTTGATGGCCGGATATTAAAACTCAATTACGCTCATATAAAAAAGAAGAAAACTCCACCACCCGTGAAACCAAAGCCTGTGACATTTAACTTGTTTGTTGCAAACTTGCACTATGAAGCAAGGTCTAAAGATCTCAAGGAATTTTTTGATGATGGAAGTGGTAGCGTTGTTTCTGCAGCAGTTATATTTCATGATAACCCTAGAAGGTCATCTGGCTATGGTTTTGTGGCCTTCAAATCCAAGAAACAAGCTGATTCAGCACTTAATGAGTTCCAAGGGAAGGTAACTCTCAAGATCTTTATGGGAAGACCAATCAGGGTAGCTCGTGGTAGGCAATTTGTTAAAGAACGAGCAAAGGAGGGTGAAACATCTGAAGATACGGCTTCTGAGTTGAATGGTGAAGAAGCTGACAAGGCTGATTGA 903 0.443 MALLSSLCIPSTTHLSTHNHSFSSFSNIHNHSITTINPFSSFQSLQLSLPYHTPTLLTTKQNPNFTLRFSQQAQAEAEAAPSVSTDEHAEQEVSQTRLLAQNVPWTSTPEDIRSLFERYGKVLQVELSMYNKTKNRGLAFVEMSSPEEARAALQNLESYEFDGRILKLNYAHIKKKKTPPPVKPKPVTFNLFVANLHYEARSKDLKEFFDDGSGSVVSAAVIFHDNPRRSSGYGFVAFKSKKQADSALNEFQGKVTLKIFMGRPIRVARGRQFVKERAKEGETSEDTASELNGEEADKAD 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00979 300 Gene3D - 57 176 IPR012677 -
Arst8g00979 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 166 IPR000504 GO:0003723
Arst8g00979 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 255 IPR000504 GO:0003723
Arst8g00979 300 PANTHER OS02G0815200 PROTEIN 34 269 - -
Arst8g00979 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 173 IPR000504 GO:0003723
Arst8g00979 300 MobiDBLite consensus disorder prediction 276 300 - -
Arst8g00979 300 CDD RRM_SF 191 267 - -
Arst8g00979 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 272 IPR000504 GO:0003723
Arst8g00979 300 SMART rrm1_1 190 268 IPR000504 GO:0003723
Arst8g00979 300 SMART rrm1_1 97 169 IPR000504 GO:0003723
Arst8g00979 300 Gene3D - 177 298 IPR012677 -
Arst8g00979 300 SUPERFAMILY RNA-binding domain, RBD 96 269 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00979 Arst-Chr8 13283011 13285666 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00979 79 280 Eukaryotic Initiation Factors Gene Family AT3G16380 29.680 1.84e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00979 - - lang:109340717 303.908